Genome sequence of the coffee root-knot nematode Meloidogyne exigua

Genome sequence of the coffee root-knot nematode Meloidogyne exigua

Root-knot nematodes ( spp.) cause serious damages on most crops. Here, we report a high-quality genome sequence of (population Mex1, Costa Rica), a major pathogen of coffee. Its mitogenome (20,974 bp) was first assembled and annotated. The nuclear genome was then constructed consisting of 206 contig...

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Veröffentlicht in:Journal of nematology 2021-01, Vol.53 (1), p.1-6, Article 2021
Hauptverfasser: Thi Phan, Ngan, Besnard, Guillaume, Ouazahrou, Rania, Sánchez, William Solano, Gil, Lisa, Manzi, Sophie, Bellafiore, Stéphane
Format: Artikel
Sprache:eng
Schlagworte:
Arts & Humanities
Biochemistry, Molecular Biology
Environmental Sciences
Genomics
Illumina
Life Sciences
Life Sciences & Biomedicine
Mitogenome
Nanopore sequencing
Nuclear genome
Root-knot nematode
Science & Technology
Zoology
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Beschreibung
Zusammenfassung:Root-knot nematodes ( spp.) cause serious damages on most crops. Here, we report a high-quality genome sequence of (population Mex1, Costa Rica), a major pathogen of coffee. Its mitogenome (20,974 bp) was first assembled and annotated. The nuclear genome was then constructed consisting of 206 contigs, with an N50 length of 1.89 Mb and a total assembly length of 42.1 Mb.
ISSN:0022-300X
2640-396X
2640-396X
DOI:10.21307/jofnem-2021-065