Use of genotype-environment interactions to elucidate the pattern of maize root plasticity to nitrogen deficiency
Maize(Zea mays L.) root morphology exhibits a high degree of phenotypic plasticity to nitrogen(N) de ficiency,but the underlying genetic architecture remains to be investigated Using an advanced BC_4F_3 population,we investigated the root growth plasticity under two contrasted N levels and identi fi...
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description | Maize(Zea mays L.) root morphology exhibits a high degree of phenotypic plasticity to nitrogen(N) de ficiency,but the underlying genetic architecture remains to be investigated Using an advanced BC_4F_3 population,we investigated the root growth plasticity under two contrasted N levels and identi fied the quantitative trait loci(QTLs) with QTL-environment(Q×E)interaction effects. Principal components analysis(PCA) on changes of root traits to N de ficiency(D LN-HN) showed that root length and biomass contributed for 45.8% in the same magnitude and direction on the first PC,while root traits scattered highly on PC_2 and PC_3. Hierarchical cluster analysis on traits for D LN-HN further assigned the BC_4F_3 lines into six groups,in which the special phenotypic responses to N de ficiency was presented These results revealed the complicated root plasticity of maize in response to N de ficiency that can be caused by genotype environment(G×E) interactions. Furthermore,QTL mapping using a multi-environment analysis identi fied 35 QTLs for root traits. Nine of these QTLs exhibited signi ficant Q×E interaction effects. Taken together,our findings contribute to understanding the phenotypic and genotypic pattern of root plasticity to N de ficiency,which will be useful for developing maize tolerance cultivars to N de ficiency. |
doi_str_mv | 10.1111/jipb.12384 |
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Principal components analysis(PCA) on changes of root traits to N de ficiency(D LN-HN) showed that root length and biomass contributed for 45.8% in the same magnitude and direction on the first PC,while root traits scattered highly on PC_2 and PC_3. Hierarchical cluster analysis on traits for D LN-HN further assigned the BC_4F_3 lines into six groups,in which the special phenotypic responses to N de ficiency was presented These results revealed the complicated root plasticity of maize in response to N de ficiency that can be caused by genotype environment(G×E) interactions. Furthermore,QTL mapping using a multi-environment analysis identi fied 35 QTLs for root traits. Nine of these QTLs exhibited signi ficant Q×E interaction effects. Taken together,our findings contribute to understanding the phenotypic and genotypic pattern of root plasticity to N de ficiency,which will be useful for developing maize tolerance cultivars to N de ficiency.</description><identifier>ISSN: 1672-9072</identifier><identifier>EISSN: 1744-7909</identifier><identifier>DOI: 10.1111/jipb.12384</identifier><identifier>PMID: 26269087</identifier><language>eng</language><publisher>China (Republic : 1949- ): Blackwell Publishing Ltd</publisher><subject>Chromosome Mapping ; Cluster analysis ; Corn ; Crosses, Genetic ; Cultivars ; Environment ; Environmental effects ; Gene loci ; Gene mapping ; Genotype ; Genotype-environment interactions ; Genotypes ; Morphology ; Nitrogen ; Nitrogen - deficiency ; Nitrogen - pharmacology ; nitrogen stress ; Phenotype ; Phenotypic plasticity ; Plant Roots - drug effects ; Plant Roots - physiology ; Plastic properties ; Plasticity ; Principal Component Analysis ; Principal components analysis ; QTL定位 ; Quantitative trait loci ; Quantitative Trait Loci - genetics ; quantitative trait locus ; Quantitative Trait, Heritable ; root morphology ; root plasticity ; Zea mays ; Zea mays - drug effects ; Zea mays - genetics ; Zea mays - physiology ; Zea mays L ; 基因型 ; 数量性状位点 ; 氮缺乏 ; 玉米根系 ; 环境分析 ; 相互作用 ; 表型可塑性</subject><ispartof>Journal of integrative plant biology, 2016-03, Vol.58 (3), p.242-253</ispartof><rights>2015 Institute of Botany, Chinese Academy of Sciences</rights><rights>2015 Institute of Botany, Chinese Academy of Sciences.</rights><rights>2016 Institute of Botany, Chinese Academy of Sciences</rights><rights>Copyright © Wanfang Data Co. Ltd. All Rights Reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4884-483d294251020313fd6c0abd30bd8eb7cac43396d67c317537c6d3bfb5608bf3</citedby><cites>FETCH-LOGICAL-c4884-483d294251020313fd6c0abd30bd8eb7cac43396d67c317537c6d3bfb5608bf3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://image.cqvip.com/vip1000/qk/94176A/94176A.jpg</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fjipb.12384$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fjipb.12384$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1416,27922,27923,45572,45573</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26269087$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Pengcheng</creatorcontrib><creatorcontrib>Zhuang, Zhongjuan</creatorcontrib><creatorcontrib>Cai, Hongguang</creatorcontrib><creatorcontrib>Cheng, Shuai</creatorcontrib><creatorcontrib>Soomro, Ayaz Ali</creatorcontrib><creatorcontrib>Liu, Zhigang</creatorcontrib><creatorcontrib>Gu, Riliang</creatorcontrib><creatorcontrib>Mi, Guohua</creatorcontrib><creatorcontrib>Yuan, Lixing</creatorcontrib><creatorcontrib>Chen, Fanjun</creatorcontrib><title>Use of genotype-environment interactions to elucidate the pattern of maize root plasticity to nitrogen deficiency</title><title>Journal of integrative plant biology</title><addtitle>Journal of Integrative Plant Biology</addtitle><description>Maize(Zea mays L.) root morphology exhibits a high degree of phenotypic plasticity to nitrogen(N) de ficiency,but the underlying genetic architecture remains to be investigated Using an advanced BC_4F_3 population,we investigated the root growth plasticity under two contrasted N levels and identi fied the quantitative trait loci(QTLs) with QTL-environment(Q×E)interaction effects. Principal components analysis(PCA) on changes of root traits to N de ficiency(D LN-HN) showed that root length and biomass contributed for 45.8% in the same magnitude and direction on the first PC,while root traits scattered highly on PC_2 and PC_3. Hierarchical cluster analysis on traits for D LN-HN further assigned the BC_4F_3 lines into six groups,in which the special phenotypic responses to N de ficiency was presented These results revealed the complicated root plasticity of maize in response to N de ficiency that can be caused by genotype environment(G×E) interactions. Furthermore,QTL mapping using a multi-environment analysis identi fied 35 QTLs for root traits. Nine of these QTLs exhibited signi ficant Q×E interaction effects. Taken together,our findings contribute to understanding the phenotypic and genotypic pattern of root plasticity to N de ficiency,which will be useful for developing maize tolerance cultivars to N de ficiency.</description><subject>Chromosome Mapping</subject><subject>Cluster analysis</subject><subject>Corn</subject><subject>Crosses, Genetic</subject><subject>Cultivars</subject><subject>Environment</subject><subject>Environmental effects</subject><subject>Gene loci</subject><subject>Gene mapping</subject><subject>Genotype</subject><subject>Genotype-environment interactions</subject><subject>Genotypes</subject><subject>Morphology</subject><subject>Nitrogen</subject><subject>Nitrogen - deficiency</subject><subject>Nitrogen - pharmacology</subject><subject>nitrogen stress</subject><subject>Phenotype</subject><subject>Phenotypic plasticity</subject><subject>Plant Roots - drug effects</subject><subject>Plant Roots - physiology</subject><subject>Plastic properties</subject><subject>Plasticity</subject><subject>Principal Component Analysis</subject><subject>Principal components analysis</subject><subject>QTL定位</subject><subject>Quantitative trait loci</subject><subject>Quantitative Trait Loci - genetics</subject><subject>quantitative trait locus</subject><subject>Quantitative Trait, Heritable</subject><subject>root morphology</subject><subject>root plasticity</subject><subject>Zea mays</subject><subject>Zea mays - drug effects</subject><subject>Zea mays - genetics</subject><subject>Zea mays - physiology</subject><subject>Zea mays L</subject><subject>基因型</subject><subject>数量性状位点</subject><subject>氮缺乏</subject><subject>玉米根系</subject><subject>环境分析</subject><subject>相互作用</subject><subject>表型可塑性</subject><issn>1672-9072</issn><issn>1744-7909</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kUtv1DAUhSMEoqWw4QegCISEkFL8SGxn2Y5gKKoKSEWV2FiOczP1kNgZ20Ob_no8zGPBAm9sXX_n3GufLHuJ0SlO68PSjM0pJlSUj7JjzMuy4DWqH6cz46SoESdH2bMQlghRgRh5mh0RRliNBD_OVj8C5K7LF2BdnEYowP423tkBbMyNjeCVjsbZkEeXQ7_WplUR8ngL-ahiurYb9aDMA-TeuZiPvQrRaBOnjcKa6F3yzlvoUhGsnp5nTzrVB3ix20-y608fr2efi8uv84vZ2WWhSyHKohS0JXVJKowIoph2LdNINS1FTSug4VrpktKatYxrinlFuWYtbbqmYkg0HT3J3m5t75TtlF3IpVt7mxrKh7v7hiDMEEWIJ-7dlhu9W60hRDmYoKHvlQW3DhJzXmGeZmAJffMPevAkSIiap9Z1ot5vKe1dCB46OXozKD9JjOQmL7nJS_7NK8GvdpbrZoD2gO4DSgDePcP0MP3HSn65-Ha-Ny22GhMi3B80yv-SjFNeyZurufw-u_nJ8fmVnCf-9W7iW2cXK5M-a69hTJTJkQn6B5Qzuzs</recordid><startdate>201603</startdate><enddate>201603</enddate><creator>Li, Pengcheng</creator><creator>Zhuang, Zhongjuan</creator><creator>Cai, Hongguang</creator><creator>Cheng, Shuai</creator><creator>Soomro, Ayaz Ali</creator><creator>Liu, Zhigang</creator><creator>Gu, Riliang</creator><creator>Mi, Guohua</creator><creator>Yuan, Lixing</creator><creator>Chen, Fanjun</creator><general>Blackwell Publishing Ltd</general><general>Wiley Subscription Services, Inc</general><general>Key Lab of Plant-Soil Interaction, M0E, Center for Resources, Environment and Food Security, Col ege Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China</general><scope>2RA</scope><scope>92L</scope><scope>CQIGP</scope><scope>W94</scope><scope>WU4</scope><scope>~WA</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>2B.</scope><scope>4A8</scope><scope>92I</scope><scope>93N</scope><scope>PSX</scope><scope>TCJ</scope></search><sort><creationdate>201603</creationdate><title>Use of genotype-environment interactions to elucidate the pattern of maize root plasticity to nitrogen deficiency</title><author>Li, Pengcheng ; Zhuang, Zhongjuan ; Cai, Hongguang ; Cheng, Shuai ; Soomro, Ayaz Ali ; Liu, Zhigang ; Gu, Riliang ; Mi, Guohua ; Yuan, Lixing ; Chen, Fanjun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4884-483d294251020313fd6c0abd30bd8eb7cac43396d67c317537c6d3bfb5608bf3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Chromosome Mapping</topic><topic>Cluster analysis</topic><topic>Corn</topic><topic>Crosses, Genetic</topic><topic>Cultivars</topic><topic>Environment</topic><topic>Environmental effects</topic><topic>Gene loci</topic><topic>Gene mapping</topic><topic>Genotype</topic><topic>Genotype-environment interactions</topic><topic>Genotypes</topic><topic>Morphology</topic><topic>Nitrogen</topic><topic>Nitrogen - deficiency</topic><topic>Nitrogen - pharmacology</topic><topic>nitrogen stress</topic><topic>Phenotype</topic><topic>Phenotypic plasticity</topic><topic>Plant Roots - drug effects</topic><topic>Plant Roots - physiology</topic><topic>Plastic properties</topic><topic>Plasticity</topic><topic>Principal Component Analysis</topic><topic>Principal components analysis</topic><topic>QTL定位</topic><topic>Quantitative trait loci</topic><topic>Quantitative Trait Loci - genetics</topic><topic>quantitative trait locus</topic><topic>Quantitative Trait, Heritable</topic><topic>root morphology</topic><topic>root plasticity</topic><topic>Zea mays</topic><topic>Zea mays - drug effects</topic><topic>Zea mays - genetics</topic><topic>Zea mays - physiology</topic><topic>Zea mays L</topic><topic>基因型</topic><topic>数量性状位点</topic><topic>氮缺乏</topic><topic>玉米根系</topic><topic>环境分析</topic><topic>相互作用</topic><topic>表型可塑性</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Pengcheng</creatorcontrib><creatorcontrib>Zhuang, Zhongjuan</creatorcontrib><creatorcontrib>Cai, Hongguang</creatorcontrib><creatorcontrib>Cheng, Shuai</creatorcontrib><creatorcontrib>Soomro, Ayaz Ali</creatorcontrib><creatorcontrib>Liu, Zhigang</creatorcontrib><creatorcontrib>Gu, Riliang</creatorcontrib><creatorcontrib>Mi, Guohua</creatorcontrib><creatorcontrib>Yuan, Lixing</creatorcontrib><creatorcontrib>Chen, Fanjun</creatorcontrib><collection>中文科技期刊数据库</collection><collection>中文科技期刊数据库-CALIS站点</collection><collection>中文科技期刊数据库-7.0平台</collection><collection>中文科技期刊数据库-自然科学</collection><collection>中文科技期刊数据库-自然科学-生物科学</collection><collection>中文科技期刊数据库- 镜像站点</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Wanfang Data Journals - Hong Kong</collection><collection>WANFANG Data Centre</collection><collection>Wanfang Data Journals</collection><collection>万方数据期刊 - 香港版</collection><collection>China Online Journals (COJ)</collection><collection>China Online Journals (COJ)</collection><jtitle>Journal of integrative plant biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Pengcheng</au><au>Zhuang, Zhongjuan</au><au>Cai, Hongguang</au><au>Cheng, Shuai</au><au>Soomro, Ayaz Ali</au><au>Liu, Zhigang</au><au>Gu, Riliang</au><au>Mi, Guohua</au><au>Yuan, Lixing</au><au>Chen, Fanjun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Use of genotype-environment interactions to elucidate the pattern of maize root plasticity to nitrogen deficiency</atitle><jtitle>Journal of integrative plant biology</jtitle><addtitle>Journal of Integrative Plant Biology</addtitle><date>2016-03</date><risdate>2016</risdate><volume>58</volume><issue>3</issue><spage>242</spage><epage>253</epage><pages>242-253</pages><issn>1672-9072</issn><eissn>1744-7909</eissn><abstract>Maize(Zea mays L.) root morphology exhibits a high degree of phenotypic plasticity to nitrogen(N) de ficiency,but the underlying genetic architecture remains to be investigated Using an advanced BC_4F_3 population,we investigated the root growth plasticity under two contrasted N levels and identi fied the quantitative trait loci(QTLs) with QTL-environment(Q×E)interaction effects. Principal components analysis(PCA) on changes of root traits to N de ficiency(D LN-HN) showed that root length and biomass contributed for 45.8% in the same magnitude and direction on the first PC,while root traits scattered highly on PC_2 and PC_3. Hierarchical cluster analysis on traits for D LN-HN further assigned the BC_4F_3 lines into six groups,in which the special phenotypic responses to N de ficiency was presented These results revealed the complicated root plasticity of maize in response to N de ficiency that can be caused by genotype environment(G×E) interactions. Furthermore,QTL mapping using a multi-environment analysis identi fied 35 QTLs for root traits. Nine of these QTLs exhibited signi ficant Q×E interaction effects. Taken together,our findings contribute to understanding the phenotypic and genotypic pattern of root plasticity to N de ficiency,which will be useful for developing maize tolerance cultivars to N de ficiency.</abstract><cop>China (Republic : 1949- )</cop><pub>Blackwell Publishing Ltd</pub><pmid>26269087</pmid><doi>10.1111/jipb.12384</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Chromosome Mapping Cluster analysis Corn Crosses, Genetic Cultivars Environment Environmental effects Gene loci Gene mapping Genotype Genotype-environment interactions Genotypes Morphology Nitrogen Nitrogen - deficiency Nitrogen - pharmacology nitrogen stress Phenotype Phenotypic plasticity Plant Roots - drug effects Plant Roots - physiology Plastic properties Plasticity Principal Component Analysis Principal components analysis QTL定位 Quantitative trait loci Quantitative Trait Loci - genetics quantitative trait locus Quantitative Trait, Heritable root morphology root plasticity Zea mays Zea mays - drug effects Zea mays - genetics Zea mays - physiology Zea mays L 基因型 数量性状位点 氮缺乏 玉米根系 环境分析 相互作用 表型可塑性 |
title | Use of genotype-environment interactions to elucidate the pattern of maize root plasticity to nitrogen deficiency |
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