Modeling biomembranes and red blood cells by coarse-grained particle methods

In this work, the previously developed coarse-grained (CG) particle models for biomembranes and red blood cells (RBCs) are reviewed, and the advantages of the CG particle methods over the continuum and atomistic simulations for modeling biological phenomena are discussed. CG particle models can larg...

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Veröffentlicht in:Applied mathematics and mechanics 2018, Vol.39 (1), p.3-20
Hauptverfasser: Li, H., Chang, H. Y., Yang, J., Lu, L., Tang, Y. H., Lykotrafitis, G.
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Sprache:eng
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Zusammenfassung:In this work, the previously developed coarse-grained (CG) particle models for biomembranes and red blood cells (RBCs) are reviewed, and the advantages of the CG particle methods over the continuum and atomistic simulations for modeling biological phenomena are discussed. CG particle models can largely increase the length scale and time scale of atomistic simulations by eliminating the fast degrees of freedom while preserving the mesoscopic structures and properties of the simulated system. Moreover, CG particle models can be used to capture the microstructural alternations in diseased RBCs and simulate the topological changes of biomembranes and RBCs, which are the major challenges to the typical continuum representations of membranes and RBCs. The power and versatility of CG particle methods are demonstrated:through simulating the dynamical processes mvolving significant topological .changes e.g. lipid self-assembly vesicle fusion and membrane budding.
ISSN:0253-4827
1573-2754
DOI:10.1007/s10483-018-2252-6