A methylome-wide study of aging using massively parallel sequencing of the methyl-CpG-enriched genomic fraction from blood in over 700 subjects

The central importance of epigenetics to the aging process is increasingly being recognized. Here we perform a methylome-wide association study (MWAS) of aging in whole blood DNA from 718 individuals, aged 25-92 years (mean = 55). We sequenced the methyl-CpG-enriched genomic DNA fraction, averaging...

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Veröffentlicht in:Human molecular genetics 2014-03, Vol.23 (5), p.1175-1185
Hauptverfasser: McClay, Joseph L, Aberg, Karolina A, Clark, Shaunna L, Nerella, Srilaxmi, Kumar, Gaurav, Xie, Lin Y, Hudson, Alexandra D, Harada, Aki, Hultman, Christina M, Magnusson, Patrik K E, Sullivan, Patrick F, Van Den Oord, Edwin J C G
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Sprache:eng
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Zusammenfassung:The central importance of epigenetics to the aging process is increasingly being recognized. Here we perform a methylome-wide association study (MWAS) of aging in whole blood DNA from 718 individuals, aged 25-92 years (mean = 55). We sequenced the methyl-CpG-enriched genomic DNA fraction, averaging 67.3 million reads per subject, to obtain methylation measurements for the ∼27 million autosomal CpGs in the human genome. Following extensive quality control, we adaptively combined methylation measures for neighboring, highly-correlated CpGs into 4 344 016 CpG blocks with which we performed association testing. Eleven age-associated differentially methylated regions (DMRs) passed Bonferroni correction (P-value < 1.15 × 10(-8)). Top findings replicated in an independent sample set of 558 subjects using pyrosequencing of bisulfite-converted DNA (min P-value < 10(-30)). To examine biological themes, we selected 70 DMRs with false discovery rate of
ISSN:0964-6906
1460-2083
DOI:10.1093/hmg/ddt511