Stochastic reaction-diffusion simulation with MesoRD

MesoRD is a tool for stochastic simulation of chemical reactions and diffusion. In particular, it is an implementation of the next subvolume method, which is an exact method to simulate the Markov process corresponding to the reaction-diffusion master equation. Availability: MesoRD is free software,...

Ausführliche Beschreibung

Gespeichert in:

Bibliographische Detailangaben
Veröffentlicht in:	Bioinformatics 2005-06, Vol.21 (12), p.2923-2924
Hauptverfasser:	Hattne, Johan, Fange, David, Elf, Johan
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Biological and medical sciences Computer Simulation Diffusion Fundamental and applied biological sciences. Psychology General aspects Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Models, Chemical Models, Statistical Software Stochastic Processes
Online-Zugang:	Volltext
Tags:	Tag hinzufügen Keine Tags, Fügen Sie den ersten Tag hinzu!

Beschreibung
Zusammenfassung:	MesoRD is a tool for stochastic simulation of chemical reactions and diffusion. In particular, it is an implementation of the next subvolume method, which is an exact method to simulate the Markov process corresponding to the reaction-diffusion master equation. Availability: MesoRD is free software, written in C++ and licensed under the GNU general public license (GPL). MesoRD runs on Linux, Mac OS X, NetBSD, Solaris and Windows XP. It can be downloaded from http://mesord.sourceforge.net. Contact: johan.elf@icm.uu.se; johan.hattne@embl-hamburg.de Supplementary information: ‘MesoRD User's Guide’ and other documents are available at http://mesord.sourceforge.net.
ISSN:	1367-4803 1367-4811 1460-2059 1367-4811
DOI:	10.1093/bioinformatics/bti431