genoPlotR: comparative gene and genome visualization in R

The amount of gene and genome data obtained by next-generation sequencing technologies generates a need for comparative visualization tools. Complementing existing software for comparison and exploration of genomics data, genoPlotR automatically creates publication-grade linear maps of gene and geno...

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Veröffentlicht in:	Bioinformatics 2010-09, Vol.26 (18), p.2334-2335
Hauptverfasser:	Guy, Lionel, Roat Kultima, Jens, Andersson, Siv G. E.
Format:	Artikel
Sprache:	eng
Schlagworte:	Animals Applications Note Bioinformatics Bioinformatik Biologi Biological and medical sciences Biology Chromosome Mapping Comparative genomics Fundamental and applied biological sciences. Psychology General aspects Genes Genome genomes Humans Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) NATURAL SCIENCES NATURVETENSKAP Other biology Software visualization Övrig biologi
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Beschreibung
Zusammenfassung:	The amount of gene and genome data obtained by next-generation sequencing technologies generates a need for comparative visualization tools. Complementing existing software for comparison and exploration of genomics data, genoPlotR automatically creates publication-grade linear maps of gene and genomes, in a highly automatic, flexible and reproducible way. Availability: genoPlotR is a platform-independent R package, available with full source code under a GPL2 license at R-Forge: http://genoplotr.r-forge.r-project.org/ Contact: lionel.guy@ebc.uu.se
ISSN:	1367-4803 1367-4811 1460-2059 1367-4811
DOI:	10.1093/bioinformatics/btq413