Unraveling the complexity of protein backbone dynamics with combined 13C and 15N solid-state NMR relaxation measurementsElectronic supplementary information (ESI) available: Additional figures and tables. Pulse sequences. Expressions for spectral densities and relaxation rates. Consideration of magic angle mis-adjustment, r.f. induced heating and polarization transfer during the R1ρ measurements. See DOI: 10.1039/c5cp03484a
Typically, protein dynamics involve a complex hierarchy of motions occurring on different time scales between conformations separated by a range of different energy barriers. NMR relaxation can in principle provide a site-specific picture of both the time scales and amplitudes of these motions, but...
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Zusammenfassung: | Typically, protein dynamics involve a complex hierarchy of motions occurring on different time scales between conformations separated by a range of different energy barriers. NMR relaxation can in principle provide a site-specific picture of both the time scales and amplitudes of these motions, but independent relaxation rates sensitive to fluctuations in different time scale ranges are required to obtain a faithful representation of the underlying dynamic complexity. This is especially pertinent for relaxation measurements in the solid state, which report on dynamics in a broader window of time scales by more than 3 orders of magnitudes compared to solution NMR relaxation. To aid in unraveling the intricacies of biomolecular dynamics we introduce
13
C spin-lattice relaxation in the rotating frame (
R
1ρ
) as a probe of backbone nanosecond-microsecond motions in proteins in the solid state. We present measurements of
13
C′
R
1ρ
rates in fully protonated crystalline protein GB1 at 600 and 850 MHz
1
H Larmor frequencies and compare them to
13
C′
R
1
,
15
N
R
1
and
R
1ρ
measured under the same conditions. The addition of carbon relaxation data to the model free analysis of nitrogen relaxation data leads to greatly improved characterization of time scales of protein backbone motions, minimizing the occurrence of fitting artifacts that may be present when
15
N data is used alone. We also discuss how internal motions characterized by different time scales contribute to
15
N and
13
C relaxation rates in the solid state and solution state, leading to fundamental differences between them, as well as phenomena such as underestimation of picosecond-range motions in the solid state and nanosecond-range motions in solution.
Combined analysis of
13
C′ and
15
N
R
1
and
R
1ρ
relaxation rates measured at two magnetic fields leads to improved modeling of backbone dynamics in crystalline protein and provides unique insights into how the same motions contribute differently to relaxation rates in solution and solid state. |
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ISSN: | 1463-9076 1463-9084 |
DOI: | 10.1039/c5cp03484a |