The Protein Data Bank: unifying the archive

The Protein Data Bank: unifying the archive

The Protein Data Bank (PDB; http://www.pdb.org/) is the single worldwide archive of structural data of biological macromolecules. This paper describes the progress that has been made in validating all data in the PDB archive and in releasing a uniform archive for the community. We have now produced...

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Veröffentlicht in:Nucleic acids research 2002-01, Vol.30 (1), p.245-248
Hauptverfasser: Westbrook, John, Feng, Zukang, Jain, Shri, Bhat, T N, Thanki, Narmada, Ravichandran, Veerasamy, Gilliland, Gary L, Bluhm, Wolfgang, Weissig, Helge, Greer, Douglas S, Bourne, Philip E, Berman, Helen M
Format: Artikel
Sprache:eng
Schlagworte:
Amino Acid Sequence
Animals
Archives
Database Management Systems
Databases, Protein
Enzymes - chemistry
Forecasting
Information Storage and Retrieval
Internet
Ligands
Polymers - chemistry
Protein Conformation
Proteins - chemistry
Quality Control
Stereoisomerism
Terminology as Topic
User-Computer Interface
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Zusammenfassung:The Protein Data Bank (PDB; http://www.pdb.org/) is the single worldwide archive of structural data of biological macromolecules. This paper describes the progress that has been made in validating all data in the PDB archive and in releasing a uniform archive for the community. We have now produced a collection of mmCIF data files for the PDB archive (ftp://beta.rcsb.org/pub/pdb/uniformity/data/mmCIF/). A utility application that converts the mmCIF data files to the PDB format (called CIFTr) has also been released to provide support for existing software.
ISSN:1362-4962
0305-1048
1362-4962
DOI:10.1093/nar/30.1.245