COX-2 -related tumor immune microenvironment in non-small cell lung cancer: a novel signature to predict hot and cold tumor
At present, non-small cell lung cancer (NSCLC) remains a great threat to the health of people worldwide. Immune checkpoint inhibitors (ICIs) have shown positive results in the treatment of advanced NSCLC. However, the treatment response of ICIs is not stable and unpredictable. We used a bioinformati...
Gespeichert in:
Veröffentlicht in: | Journal of thoracic disease 2022-03, Vol.14 (3), p.729-740 |
---|---|
Hauptverfasser: | , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
Zusammenfassung: | At present, non-small cell lung cancer (NSCLC) remains a great threat to the health of people worldwide. Immune checkpoint inhibitors (ICIs) have shown positive results in the treatment of advanced NSCLC. However, the treatment response of ICIs is not stable and unpredictable. We used a bioinformatics analysis to determine a novel signature to diagnose the hot and cold tumor in NSCLC which may guide the programmed cell death protein 1/programmed cell death 1 ligand 1 (
) therapeutic strategy.
The RNA-seq dataset and clinical data of 485 lung adenocarcinoma (LUAD) and 473 lung squamous cell carcinoma (LUSC) samples from The Cancer Genome Atlas (TCGA) database. Tumor infiltrating immune cells was calculated by CIBERSORT algorithm and ConsensusClusterPlus was used to classify the hot and cold tumor. Least absolute shrinkage and selection operator (LASSO) regression, Support Vector Machine (SVM) and Gaussian Mixture Model (GMM) were performed to determine the diagnostic area under curve (AUC) of novel signature of ICIs treatment. Overall survival (OS) analysis was based on the Kaplan-Meier statistical method.
In this study, we found that the expression of
is associated with
(
) expression. We identified novel signatures [
,
,
,
,
,
,
, combined diagnostic (AUC) =0.838], in order to diagnose the hot and cold tumor subtype to indicate the treatment response of
inhibitor in NSCLC. Furthermore, we found that in hot tumor subtype, high
expression group had worse OS than low
expression group (P=0.047); high
expression group had worse OS than low SH2D3C expression group either (P=0.003).
was correlated to
expression in NSCLC samples (R=0.49, P |
---|---|
ISSN: | 2072-1439 2077-6624 |
DOI: | 10.21037/jtd-22-257 |