Applications of density functional theory in COVID-19 drug modeling

•Rapidly evolving COVID-19 pandemic demands the discovery of effective antiviral drugs.•DFT is extensively applied in molecular modeling studies of COVID-19 pharmaceuticals.•DFT is used as a stand-alone method for electronic structure calculations of drug compounds.•Molecular mechanics techniques an...

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Veröffentlicht in:Drug discovery today 2022-05, Vol.27 (5), p.1411-1419
Hauptverfasser: Ye, Naike, Yang, Zekai, Liu, Yuchen
Format: Artikel
Sprache:eng
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Zusammenfassung:•Rapidly evolving COVID-19 pandemic demands the discovery of effective antiviral drugs.•DFT is extensively applied in molecular modeling studies of COVID-19 pharmaceuticals.•DFT is used as a stand-alone method for electronic structure calculations of drug compounds.•Molecular mechanics techniques and DFT are applied in synergy to examine drug-target interactions.•Hybrid QM/MM approach accurately elucidates catalytic/inhibitory reaction mechanisms. The rapidly evolving Coronavirus 2019 (COVID-19) pandemic has led to millions of deaths around the world, highlighting the pressing need to develop effective antiviral pharmaceuticals. Recent efforts with computer-aided rational drug discovery have allowed detailed examination of drug–macromolecule interactions primarily by molecular mechanics (MM) techniques. Less widely applied in COVID-19 drug modeling is density functional theory (DFT), a quantum mechanics (QM) method that enables electronic structure calculations and elucidations of reaction mechanisms. Here, we review recent advances in applying DFT in molecular modeling studies of COVID-19 pharmaceuticals. We start by providing an overview of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) drugs and targets, followed by a brief introduction to DFT. We then provide a discussion of different approaches by which DFT has been applied. Finally, we discuss essential factors to consider when incorporating DFT in future drug modeling research.
ISSN:1359-6446
1878-5832
DOI:10.1016/j.drudis.2021.12.017