SAMPL7 physical property prediction from EC-RISM theory
Inspired by the successful application of the embedded cluster reference interaction site model (EC-RISM), a combination of quantum–mechanical calculations with three-dimensional RISM theory to predict Gibbs energies of species in solution within the SAMPL6.1 (acidity constants, p K a ) and SAMPL6.2...
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Veröffentlicht in: | Journal of computer-aided molecular design 2021-08, Vol.35 (8), p.933-941 |
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Hauptverfasser: | , , |
Format: | Artikel |
Sprache: | eng |
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Zusammenfassung: | Inspired by the successful application of the embedded cluster reference interaction site model (EC-RISM), a combination of quantum–mechanical calculations with three-dimensional RISM theory to predict Gibbs energies of species in solution within the SAMPL6.1 (acidity constants, p
K
a
) and SAMPL6.2 (octanol–water partition coefficients, log
P
) the methodology was applied to the recent SAMPL7 physical property challenge on aqueous p
K
a
and octanol–water log
P
values. Not part of the challenge but provided by the organizers, we also computed distribution coefficients log
D
7.4
from predicted p
K
a
and log
P
data. While macroscopic p
K
a
predictions compared very favorably with experimental data (root mean square error, RMSE 0.72 p
K
units), the performance of the log
P
model (RMSE 1.84) fell behind expectations from the SAMPL6.2 challenge, leading to reasonable log
D
7.4
predictions (RMSE 1.69) from combining the independent calculations. In the post-submission phase, conformations generated by different methodology yielded results that did not significantly improve the original predictions. While overall satisfactory compared to previous log
D
challenges, the predicted data suggest that further effort is needed for optimizing the robustness of the partition coefficient model within EC-RISM calculations and for shaping the agreement between experimental conditions and the corresponding model description. |
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ISSN: | 0920-654X 1573-4951 1573-4951 |
DOI: | 10.1007/s10822-021-00410-9 |