3DBionotes COVID-19 edition

Abstract Summary The web platform 3DBionotes-WS integrates multiple web services and an interactive web viewer to provide a unified environment in which biological annotations can be analyzed in their structural context. Since the COVID-19 outbreak, new structural data from many viral proteins have...

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Veröffentlicht in:Bioinformatics (Oxford, England) England), 2021-11, Vol.37 (22), p.4258-4260
Hauptverfasser: Macias, Jose Ramon, Sanchez-Garcia, Ruben, Conesa, Pablo, Ramirez-Aportela, Erney, Martinez Gonzalez, Marta, Wert-Carvajal, Carlos, Parra-Perez, Alberto M, Segura Mora, Joan, Horrell, Sam, Thorn, Andrea, Sorzano, Carlos O S, Carazo, Jose Maria
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Sprache:eng
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Zusammenfassung:Abstract Summary The web platform 3DBionotes-WS integrates multiple web services and an interactive web viewer to provide a unified environment in which biological annotations can be analyzed in their structural context. Since the COVID-19 outbreak, new structural data from many viral proteins have been provided at a very fast pace. This effort includes many cryogenic electron microscopy (cryo-EM) studies, together with more traditional ones (X-rays, NMR), using several modeling approaches and complemented with structural predictions. At the same time, a plethora of new genomics and interactomics information (including fragment screening and structure-based virtual screening efforts) have been made available from different servers. In this context, we have developed 3DBionotes-COVID-19 as an answer to: (i) the need to explore multiomics data in a unified context with a special focus on structural information and (ii) the drive to incorporate quality measurements, especially in the form of advanced validation metrics for cryo-EM. Availability and implementation https://3dbionotes.cnb.csic.es/ws/covid19. Supplementary information Supplementary data are available at Bioinformatics online.
ISSN:1367-4803
1367-4811
DOI:10.1093/bioinformatics/btab397