Molecular Profiling Reveals Involvement of ESCO2 in Intermediate Progenitor Cell Maintenance in the Developing Mouse Cortex

Intermediate progenitor cells (IPCs) are neocortical neuronal precursors. Although IPCs play crucial roles in corticogenesis, their molecular features remain largely unknown. In this study, we aimed to characterize the molecular profile of IPCs. We isolated TBR2-positive (+) IPCs and TBR2-negative (−) cell populations in the developing mouse cortex. Comparative genome-wide gene expression analysis of TBR2+ IPCs versus TBR2− cells revealed differences in key factors involved in chromatid segregation, cell-cycle regulation, transcriptional regulation, and cell signaling. Notably, mutation of many IPC genes in human has led to intellectual disability and caused a wide range of cortical malformations, including microcephaly and agenesis of corpus callosum. Loss-of-function experiments in cortex-specific mutants of Esco2, one of the novel IPC genes, demonstrate its critical role in IPC maintenance, and substantiate the identification of a central genetic determinant of IPC biogenesis. Our data provide novel molecular characteristics of IPCs in the developing mouse cortex. [Display omitted] •Purification and transcriptome profiling of IPCs in developing mouse cortex•Identified 1,119 IPC-enriched genes with over 350 novel IPC genes in SVZ confirmed•IPC gene mutation is linked to intellectual disability and cortical malformation•Esco2, a novel IPC-enriched gene, is needed for IPC viability during corticogenesis In this article, Tuoc and colleagues show that the expression of many genes, including ESCO2, which encode for key factors involved in chromatid segregation, cell-cycle regulation, transcriptional regulation, and cell signaling, is enriched in intermediate progenitor cells, and their mutation has implications for a wide range of cortical malformations and functional disabilities in the mouse and human brain.