Learning from reproducing computational results: introducing three principles and the Reproduction Package

We carry out efforts to reproduce computational results for seven published articles and identify barriers to computational reproducibility. We then derive three principles to guide the practice and dissemination of reproducible computational research: (i) Provide transparency regarding how computat...

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Veröffentlicht in:Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences physical, and engineering sciences, 2021-05, Vol.379 (2197), p.20200069, Article rsta.2020.0069
Hauptverfasser: Krafczyk, M S, Shi, A, Bhaskar, A, Marinov, D, Stodden, V
Format: Artikel
Sprache:eng
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Zusammenfassung:We carry out efforts to reproduce computational results for seven published articles and identify barriers to computational reproducibility. We then derive three principles to guide the practice and dissemination of reproducible computational research: (i) Provide transparency regarding how computational results are produced; (ii) When writing and releasing research software, aim for ease of (re-)executability; (iii) Make any code upon which the results rely as deterministic as possible. We then exemplify these three principles with 12 specific guidelines for their implementation in practice. We illustrate the three principles of reproducible research with a series of vignettes from our experimental reproducibility work. We define a novel , a formalism that specifies a structured way to share computational research artifacts that implements the guidelines generated from our reproduction efforts to allow others to build, reproduce and extend computational science. We make our reproduction efforts in this paper publicly available as exemplar . This article is part of the theme issue 'Reliability and reproducibility in computational science: implementing verification, validation and uncertainty quantification '.
ISSN:1364-503X
1471-2962
1471-2962
DOI:10.1098/rsta.2020.0069