The Mitochondrial Acyl-carrier Protein Interaction Network Highlights Important Roles for LYRM Family Members in Complex I and Mitoribosome Assembly

The mitochondrial acyl-carrier protein NDUFAB1 interacts with members of the LYRM (Leucine-Tyrosine-Arginine motif) family to perform a variety of functions. Here we describe the importance of two LYRM proteins in the assembly of multi-subunit mitochondrial complexes. The AltMiD51 LYRM member participates in the assembly of the mitoribosome through stabilization of the mitochondrial ribosome assembly factor MALSU1 whereas LYRM2 is required for efficient assembly of complex I through integration of the N-module. [Display omitted] Highlights •The interaction network of NDUFAB1 reveal associations with 9 known LYRM proteins as well as more than 20 other proteins involved in mitochondrial respiratory chain complex and mitochondrial ribosome assembly.•The LYRM protein AltMiD51 is required for the stability of assembly factor MALSU1 and optimal assembly of the mitoribosome.•LYRM2 is important for integration of the N-module into respiratory chain complex I. NDUFAB1 is the mitochondrial acyl carrier protein (ACP) essential for cell viability. Through its pantetheine-4′-phosphate post-translational modification, NDUFAB1 interacts with members of the leucine-tyrosine-arginine motif (LYRM) protein family. Although several LYRM proteins have been described to participate in a variety of defined processes, the functions of others remain either partially or entirely unknown. We profiled the interaction network of NDUFAB1 to reveal associations with 9 known LYRM proteins as well as more than 20 other proteins involved in mitochondrial respiratory chain complex and mitochondrial ribosome assembly. Subsequent knockout and interaction network studies in human cells revealed the LYRM member AltMiD51 to be important for optimal assembly of the large mitoribosome subunit, consistent with recent structural studies. In addition, we used proteomics coupled with topographical heat-mapping to reveal that knockout of LYRM2 impairs assembly of the NADH-dehydrogenase module of complex I, leading to defects in cellular respiration. Together, this work adds to the catalogue of functions executed by LYRM family of proteins in building mitochondrial complexes and emphasizes the common and essential role of NDUFAB1 as a protagonist in mitochondrial metabolism.