Identification of putative drugs for gastric adenocarcinoma utilizing differentially expressed genes and connectivity map

Gastric adenocarcinoma (GAC) is a challenging disease with dim prognosis even after surgery; hence, novel treatments for GAC are in urgent need. The aim of the present study was to explore new potential compounds interfering with the key pathways related to GAC progression. The differentially expres...

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Veröffentlicht in:Molecular medicine reports 2019-02, Vol.19 (2), p.1004-1015
Hauptverfasser: Chen, Zu-Xuan, Zou, Xiao-Ping, Yan, Huang-Qun, Zhang, Rui, Pang, Jin-Shu, Qin, Xin-Gan, He, Rong-Quan, Ma, Jie, Feng, Zhen-Bo, Chen, Gang, Gan, Ting-Qing
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Sprache:eng
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Zusammenfassung:Gastric adenocarcinoma (GAC) is a challenging disease with dim prognosis even after surgery; hence, novel treatments for GAC are in urgent need. The aim of the present study was to explore new potential compounds interfering with the key pathways related to GAC progression. The differentially expressed genes (DEGs) between GAC and adjacent tissues were identified from The Cancer Genome Atlas (TCGA) and Genotype‑Tissue Expression (GTEx) database. Connectivity Map (CMap) was performed to screen candidate compounds for treating GAC. Subsequently, pathways affected by compounds were overlapped with those enriched by the DEGs to further identify compounds which had anti‑GAC potential. A total of 843 DEGs of GAC were identified. Via Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, 13 pathways were significantly enriched. Moreover, 78 compounds with markedly negative correlations with DEGs were revealed in CMap database (P
ISSN:1791-2997
1791-3004
DOI:10.3892/mmr.2018.9758