SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data

Abstract Summary SPUTNIK is an R package consisting of a series of tools to filter mass spectrometry imaging peaks characterized by a noisy or unlikely spatial distribution. SPUTNIK can produce mass spectrometry imaging datasets characterized by a smaller but more informative set of peaks, reduce th...

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Veröffentlicht in:Bioinformatics 2019-01, Vol.35 (1), p.178-180
Hauptverfasser: Inglese, Paolo, Correia, Gonçalo, Takats, Zoltan, Nicholson, Jeremy K, Glen, Robert C
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Sprache:eng
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Zusammenfassung:Abstract Summary SPUTNIK is an R package consisting of a series of tools to filter mass spectrometry imaging peaks characterized by a noisy or unlikely spatial distribution. SPUTNIK can produce mass spectrometry imaging datasets characterized by a smaller but more informative set of peaks, reduce the complexity of subsequent multi-variate analysis and increase the interpretability of the statistical results. Availability and implementation SPUTNIK is freely available online from CRAN repository and at https://github.com/paoloinglese/SPUTNIK. The package is distributed under the GNU General Public License version 3 and is accompanied by example files and data. Supplementary information Supplementary data are available at Bioinformatics online.
ISSN:1367-4803
1460-2059
1367-4811
DOI:10.1093/bioinformatics/bty622