A Post-Transcriptional Feedback Mechanism for Noise Suppression and Fate Stabilization

Diverse biological systems utilize fluctuations (“noise”) in gene expression to drive lineage-commitment decisions. However, once a commitment is made, noise becomes detrimental to reliable function, and the mechanisms enabling post-commitment noise suppression are unclear. Here, we find that architectural constraints on noise suppression are overcome to stabilize fate commitment. Using single-molecule and time-lapse imaging, we find that—after a noise-driven event—human immunodeficiency virus (HIV) strongly attenuates expression noise through a non-transcriptional negative-feedback circuit. Feedback is established through a serial cascade of post-transcriptional splicing, whereby proteins generated from spliced mRNAs auto-deplete their own precursor unspliced mRNAs. Strikingly, this auto-depletion circuitry minimizes noise to stabilize HIV’s commitment decision, and a noise-suppression molecule promotes stabilization. This feedback mechanism for noise suppression suggests a functional role for delayed splicing in other systems and may represent a generalizable architecture of diverse homeostatic signaling circuits. [Display omitted] •Post-transcriptional splicing enables feedback via auto-depletion of precursor RNA•RNA auto-depletion attenuates noise better than transcriptional auto-repression•Auto-depletion counterbalances noisy fate-selection circuitry, stabilizing HIV fate•Disrupting RNA auto-depletion amplifies transcriptional noise, promoting HIV latency Noise helps drive fate decisions, and a mechanism rooted in alternative splicing allows cells to stop dithering and commit.