Genomic characterization of grapevine virus J, a novel virus identified in grapevine

Genomic characterization of grapevine virus J, a novel virus identified in grapevine

This paper describes the nucleotide sequence and genome organization of a novel RNA virus detected in grapevine ( Vitis vinifera ) cultivar ‘Kizil Sapak’ by high-throughput sequencing (HTS) and tentatively named “grapevine virus J” (GVJ). The full genome of GVJ is 7,390 nucleotides in length, which...

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Veröffentlicht in:Archives of virology 2018-07, Vol.163 (7), p.1965-1967
Hauptverfasser: Diaz-Lara, Alfredo, Golino, Deborah, Al Rwahnih, Maher
Format: Artikel
Sprache:eng
Schlagworte:
Annotated Sequence Record
Biomedical and Life Sciences
Biomedicine
cultivars
genes
Genomes
genomics
Grapevine virus D
high-throughput nucleotide sequencing
Homology
Infectious Diseases
Medical Microbiology
Movement protein
Next-generation sequencing
Nucleotide sequence
nucleotides
Open reading frames
Phylogeny
plant viruses
Replicase
RNA viruses
sequence homology
Virology
viruses
Vitis vinifera
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Zusammenfassung:This paper describes the nucleotide sequence and genome organization of a novel RNA virus detected in grapevine ( Vitis vinifera ) cultivar ‘Kizil Sapak’ by high-throughput sequencing (HTS) and tentatively named “grapevine virus J” (GVJ). The full genome of GVJ is 7,390 nucleotides in length, which comprises five open reading frames (ORFs), including a 20K ORF (ORF 2) between the replicase (ORF 1) and the movement protein (ORF 3) genes. According to the level of sequence homology and phylogenetics, GVJ is proposed as a new member of the genus Vitivirus (subfamily Trivirinae ; family Betaflexiviridae ), with the closest characterized virus being grapevine virus D (GVD).
ISSN:0304-8608
1432-8798
DOI:10.1007/s00705-018-3793-y