Genome-Wide Identification and Structural Analysis of bZIP Transcription Factor Genes in Brassica napus
The basic region/leucine zipper motif (bZIP) transcription factor family is one of the largest families of transcriptional regulators in plants. bZIP genes have been systematically characterized in some plants, but not in rapeseed ( ). In this study, we identified 247 genes in the rapeseed genome, w...
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| Veröffentlicht in: | Genes 2017-10, Vol.8 (10), p.288 |
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| creator | Zhou, Yan Xu, Daixiang Jia, Ledong Huang, Xiaohu Ma, Guoqiang Wang, Shuxian Zhu, Meichen Zhang, Aoxiang Guan, Mingwei Lu, Kun Xu, Xinfu Wang, Rui Li, Jiana Qu, Cunmin |
| description | The basic region/leucine zipper motif (bZIP) transcription factor family is one of the largest families of transcriptional regulators in plants. bZIP genes have been systematically characterized in some plants, but not in rapeseed (
). In this study, we identified 247
genes in the rapeseed genome, which we classified into 10 subfamilies based on phylogenetic analysis of their deduced protein sequences. The
genes were grouped into functional clades with
genes with similar putative functions, indicating functional conservation. Genome mapping analysis revealed that the
are distributed unevenly across all 19 chromosomes, and that some of these genes arose through whole-genome duplication and dispersed duplication events. All expression profiles of 247 bZIP genes were extracted from RNA-sequencing data obtained from 17 different
.
ZS11 tissues with 42 various developmental stages. These genes exhibited different expression patterns in various tissues, revealing that these genes are differentially regulated. Our results provide a valuable foundation for functional dissection of the different
homologs in
.
and its parental lines and for molecular breeding studies of
genes in
.
. |
| doi_str_mv | 10.3390/genes8100288 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5664138</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1955068798</sourcerecordid><originalsourceid>FETCH-LOGICAL-c455t-140e6d6797cb73b5c17d1c9feaca3a873fd8e78fa551022d76a507f518c179173</originalsourceid><addsrcrecordid>eNpdkc1LxDAQxYMoKurNswS8eLCaNM1HL4KKrguCgorgJcym6RrpJmvSCv73Zv1idS4zMD8eb-YhtEvJEWM1OZ5ab5OihJRKraDNkkhWVFXJV5fmDbST0gvJVZGSEL6ONsqaiIrVbBNNR9aHmS0eXWPxuLG-d60z0LvgMfgG3_VxMP0QocOnHrr35BIOLZ48jW_xfQSfTHTzT_oSTB8iHi0cYefxWYSUshT2MB_SNlproUt257tvoYfLi_vzq-L6ZjQ-P70uTMV5X9CKWNEIWUszkWzCDZUNNXVrwQADJVnbKCtVC5xTUpaNFMCJbDlVmaypZFvo5Et3PkxmtjH5oOxdz6ObQXzXAZz-u_HuWU_Dm-ZCVJSpLHDwLRDD62BTr2cuGdt14G0YkqY150QoWS_Q_X_oSxhi_tKCElwoRasyU4dflIkhpWjbXzOU6EWIejnEjO8tH_AL_0TGPgChrpkI</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1965688142</pqid></control><display><type>article</type><title>Genome-Wide Identification and Structural Analysis of bZIP Transcription Factor Genes in Brassica napus</title><source>PubMed Central Open Access</source><source>MDPI - Multidisciplinary Digital Publishing Institute</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Zhou, Yan ; Xu, Daixiang ; Jia, Ledong ; Huang, Xiaohu ; Ma, Guoqiang ; Wang, Shuxian ; Zhu, Meichen ; Zhang, Aoxiang ; Guan, Mingwei ; Lu, Kun ; Xu, Xinfu ; Wang, Rui ; Li, Jiana ; Qu, Cunmin</creator><creatorcontrib>Zhou, Yan ; Xu, Daixiang ; Jia, Ledong ; Huang, Xiaohu ; Ma, Guoqiang ; Wang, Shuxian ; Zhu, Meichen ; Zhang, Aoxiang ; Guan, Mingwei ; Lu, Kun ; Xu, Xinfu ; Wang, Rui ; Li, Jiana ; Qu, Cunmin</creatorcontrib><description>The basic region/leucine zipper motif (bZIP) transcription factor family is one of the largest families of transcriptional regulators in plants. bZIP genes have been systematically characterized in some plants, but not in rapeseed (
). In this study, we identified 247
genes in the rapeseed genome, which we classified into 10 subfamilies based on phylogenetic analysis of their deduced protein sequences. The
genes were grouped into functional clades with
genes with similar putative functions, indicating functional conservation. Genome mapping analysis revealed that the
are distributed unevenly across all 19 chromosomes, and that some of these genes arose through whole-genome duplication and dispersed duplication events. All expression profiles of 247 bZIP genes were extracted from RNA-sequencing data obtained from 17 different
.
ZS11 tissues with 42 various developmental stages. These genes exhibited different expression patterns in various tissues, revealing that these genes are differentially regulated. Our results provide a valuable foundation for functional dissection of the different
homologs in
.
and its parental lines and for molecular breeding studies of
genes in
.
.</description><identifier>ISSN: 2073-4425</identifier><identifier>EISSN: 2073-4425</identifier><identifier>DOI: 10.3390/genes8100288</identifier><identifier>PMID: 29064393</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Brassica napus ; Developmental stages ; Gene mapping ; Genomes ; Leucine zipper proteins ; Phylogeny ; Plant breeding ; Rape plants ; Ribonucleic acid ; RNA ; Transcription factors</subject><ispartof>Genes, 2017-10, Vol.8 (10), p.288</ispartof><rights>Copyright MDPI AG 2017</rights><rights>2017 by the authors. 2017</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c455t-140e6d6797cb73b5c17d1c9feaca3a873fd8e78fa551022d76a507f518c179173</citedby><cites>FETCH-LOGICAL-c455t-140e6d6797cb73b5c17d1c9feaca3a873fd8e78fa551022d76a507f518c179173</cites><orcidid>0000-0003-1370-8633 ; 0000-0003-2413-2350</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5664138/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5664138/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,725,778,782,883,27907,27908,53774,53776</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29064393$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhou, Yan</creatorcontrib><creatorcontrib>Xu, Daixiang</creatorcontrib><creatorcontrib>Jia, Ledong</creatorcontrib><creatorcontrib>Huang, Xiaohu</creatorcontrib><creatorcontrib>Ma, Guoqiang</creatorcontrib><creatorcontrib>Wang, Shuxian</creatorcontrib><creatorcontrib>Zhu, Meichen</creatorcontrib><creatorcontrib>Zhang, Aoxiang</creatorcontrib><creatorcontrib>Guan, Mingwei</creatorcontrib><creatorcontrib>Lu, Kun</creatorcontrib><creatorcontrib>Xu, Xinfu</creatorcontrib><creatorcontrib>Wang, Rui</creatorcontrib><creatorcontrib>Li, Jiana</creatorcontrib><creatorcontrib>Qu, Cunmin</creatorcontrib><title>Genome-Wide Identification and Structural Analysis of bZIP Transcription Factor Genes in Brassica napus</title><title>Genes</title><addtitle>Genes (Basel)</addtitle><description>The basic region/leucine zipper motif (bZIP) transcription factor family is one of the largest families of transcriptional regulators in plants. bZIP genes have been systematically characterized in some plants, but not in rapeseed (
). In this study, we identified 247
genes in the rapeseed genome, which we classified into 10 subfamilies based on phylogenetic analysis of their deduced protein sequences. The
genes were grouped into functional clades with
genes with similar putative functions, indicating functional conservation. Genome mapping analysis revealed that the
are distributed unevenly across all 19 chromosomes, and that some of these genes arose through whole-genome duplication and dispersed duplication events. All expression profiles of 247 bZIP genes were extracted from RNA-sequencing data obtained from 17 different
.
ZS11 tissues with 42 various developmental stages. These genes exhibited different expression patterns in various tissues, revealing that these genes are differentially regulated. Our results provide a valuable foundation for functional dissection of the different
homologs in
.
and its parental lines and for molecular breeding studies of
genes in
.
.</description><subject>Brassica napus</subject><subject>Developmental stages</subject><subject>Gene mapping</subject><subject>Genomes</subject><subject>Leucine zipper proteins</subject><subject>Phylogeny</subject><subject>Plant breeding</subject><subject>Rape plants</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Transcription factors</subject><issn>2073-4425</issn><issn>2073-4425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNpdkc1LxDAQxYMoKurNswS8eLCaNM1HL4KKrguCgorgJcym6RrpJmvSCv73Zv1idS4zMD8eb-YhtEvJEWM1OZ5ab5OihJRKraDNkkhWVFXJV5fmDbST0gvJVZGSEL6ONsqaiIrVbBNNR9aHmS0eXWPxuLG-d60z0LvgMfgG3_VxMP0QocOnHrr35BIOLZ48jW_xfQSfTHTzT_oSTB8iHi0cYefxWYSUshT2MB_SNlproUt257tvoYfLi_vzq-L6ZjQ-P70uTMV5X9CKWNEIWUszkWzCDZUNNXVrwQADJVnbKCtVC5xTUpaNFMCJbDlVmaypZFvo5Et3PkxmtjH5oOxdz6ObQXzXAZz-u_HuWU_Dm-ZCVJSpLHDwLRDD62BTr2cuGdt14G0YkqY150QoWS_Q_X_oSxhi_tKCElwoRasyU4dflIkhpWjbXzOU6EWIejnEjO8tH_AL_0TGPgChrpkI</recordid><startdate>20171024</startdate><enddate>20171024</enddate><creator>Zhou, Yan</creator><creator>Xu, Daixiang</creator><creator>Jia, Ledong</creator><creator>Huang, Xiaohu</creator><creator>Ma, Guoqiang</creator><creator>Wang, Shuxian</creator><creator>Zhu, Meichen</creator><creator>Zhang, Aoxiang</creator><creator>Guan, Mingwei</creator><creator>Lu, Kun</creator><creator>Xu, Xinfu</creator><creator>Wang, Rui</creator><creator>Li, Jiana</creator><creator>Qu, Cunmin</creator><general>MDPI AG</general><general>MDPI</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-1370-8633</orcidid><orcidid>https://orcid.org/0000-0003-2413-2350</orcidid></search><sort><creationdate>20171024</creationdate><title>Genome-Wide Identification and Structural Analysis of bZIP Transcription Factor Genes in Brassica napus</title><author>Zhou, Yan ; Xu, Daixiang ; Jia, Ledong ; Huang, Xiaohu ; Ma, Guoqiang ; Wang, Shuxian ; Zhu, Meichen ; Zhang, Aoxiang ; Guan, Mingwei ; Lu, Kun ; Xu, Xinfu ; Wang, Rui ; Li, Jiana ; Qu, Cunmin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c455t-140e6d6797cb73b5c17d1c9feaca3a873fd8e78fa551022d76a507f518c179173</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Brassica napus</topic><topic>Developmental stages</topic><topic>Gene mapping</topic><topic>Genomes</topic><topic>Leucine zipper proteins</topic><topic>Phylogeny</topic><topic>Plant breeding</topic><topic>Rape plants</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>Transcription factors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhou, Yan</creatorcontrib><creatorcontrib>Xu, Daixiang</creatorcontrib><creatorcontrib>Jia, Ledong</creatorcontrib><creatorcontrib>Huang, Xiaohu</creatorcontrib><creatorcontrib>Ma, Guoqiang</creatorcontrib><creatorcontrib>Wang, Shuxian</creatorcontrib><creatorcontrib>Zhu, Meichen</creatorcontrib><creatorcontrib>Zhang, Aoxiang</creatorcontrib><creatorcontrib>Guan, Mingwei</creatorcontrib><creatorcontrib>Lu, Kun</creatorcontrib><creatorcontrib>Xu, Xinfu</creatorcontrib><creatorcontrib>Wang, Rui</creatorcontrib><creatorcontrib>Li, Jiana</creatorcontrib><creatorcontrib>Qu, Cunmin</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection (ProQuest)</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhou, Yan</au><au>Xu, Daixiang</au><au>Jia, Ledong</au><au>Huang, Xiaohu</au><au>Ma, Guoqiang</au><au>Wang, Shuxian</au><au>Zhu, Meichen</au><au>Zhang, Aoxiang</au><au>Guan, Mingwei</au><au>Lu, Kun</au><au>Xu, Xinfu</au><au>Wang, Rui</au><au>Li, Jiana</au><au>Qu, Cunmin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-Wide Identification and Structural Analysis of bZIP Transcription Factor Genes in Brassica napus</atitle><jtitle>Genes</jtitle><addtitle>Genes (Basel)</addtitle><date>2017-10-24</date><risdate>2017</risdate><volume>8</volume><issue>10</issue><spage>288</spage><pages>288-</pages><issn>2073-4425</issn><eissn>2073-4425</eissn><abstract>The basic region/leucine zipper motif (bZIP) transcription factor family is one of the largest families of transcriptional regulators in plants. bZIP genes have been systematically characterized in some plants, but not in rapeseed (
). In this study, we identified 247
genes in the rapeseed genome, which we classified into 10 subfamilies based on phylogenetic analysis of their deduced protein sequences. The
genes were grouped into functional clades with
genes with similar putative functions, indicating functional conservation. Genome mapping analysis revealed that the
are distributed unevenly across all 19 chromosomes, and that some of these genes arose through whole-genome duplication and dispersed duplication events. All expression profiles of 247 bZIP genes were extracted from RNA-sequencing data obtained from 17 different
.
ZS11 tissues with 42 various developmental stages. These genes exhibited different expression patterns in various tissues, revealing that these genes are differentially regulated. Our results provide a valuable foundation for functional dissection of the different
homologs in
.
and its parental lines and for molecular breeding studies of
genes in
.
.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>29064393</pmid><doi>10.3390/genes8100288</doi><orcidid>https://orcid.org/0000-0003-1370-8633</orcidid><orcidid>https://orcid.org/0000-0003-2413-2350</orcidid><oa>free_for_read</oa></addata></record> |
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| source | PubMed Central Open Access; MDPI - Multidisciplinary Digital Publishing Institute; EZB-FREE-00999 freely available EZB journals; PubMed Central |
| subjects | Brassica napus Developmental stages Gene mapping Genomes Leucine zipper proteins Phylogeny Plant breeding Rape plants Ribonucleic acid RNA Transcription factors |
| title | Genome-Wide Identification and Structural Analysis of bZIP Transcription Factor Genes in Brassica napus |
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