BioNetGen 2.2: advances in rule-based modeling

BioNetGen 2.2: advances in rule-based modeling

: BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these additions, discussing how they facilitate the construction, simula...

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Veröffentlicht in:Bioinformatics (Oxford, England) England), 2016-11, Vol.32 (21), p.3366-3368
Hauptverfasser: Harris, Leonard A, Hogg, Justin S, Tapia, José-Juan, Sekar, John A P, Gupta, Sanjana, Korsunsky, Ilya, Arora, Arshi, Barua, Dipak, Sheehan, Robert P, Faeder, James R
Format: Artikel
Sprache:eng
Schlagworte:
Applications Notes
Biochemistry
Humans
Models, Theoretical
Programming Languages
Software
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Beschreibung
Zusammenfassung:: BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these additions, discussing how they facilitate the construction, simulation and analysis of larger and more complex models than previously possible. Stable BioNetGen releases (Linux, Mac OS/X and Windows), with documentation, are available at http://bionetgen.org Source code is available at http://github.com/RuleWorld/bionetgen CONTACT: bionetgen.help@gmail.comSupplementary information: Supplementary data are available at Bioinformatics online.
ISSN:1367-4803
1367-4811
DOI:10.1093/bioinformatics/btw469