3D Genome Tuner： Compare Multiple Circular Genomes in a 3D Context

3D Genome Tuner： Compare Multiple Circular Genomes in a 3D Context

Circular genomes, being the largest proportion of sequenced genomes, play an important role in genome analysis. However, traditional 2D circular map only provides an overview and annotations of genome but does not offer feature-based comparison. For remedying these shortcomings, we developed 3D Geno...

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Veröffentlicht in:Genomics, proteomics & bioinformatics proteomics & bioinformatics, 2009-09, Vol.7 (3), p.143-146
Hauptverfasser: Wang, Qi, Liang, Qun, Zhang, Xiuqing
Format: Artikel
Sprache:eng
Schlagworte:
Animals
Application Note
circular map
comparative genomics
Computational Biology
Databases, Genetic
Genome
genome browser
Humans
Internet
Software
three dimensional
User-Computer Interface
三维空间
基于特征
基因组分析
基因组注释
多循环
比较基因组学
调谐器
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Zusammenfassung:Circular genomes, being the largest proportion of sequenced genomes, play an important role in genome analysis. However, traditional 2D circular map only provides an overview and annotations of genome but does not offer feature-based comparison. For remedying these shortcomings, we developed 3D Genome Tuner,a hybrid of circular map and comparative map tools. Its capability of viewing comparisons between multiple circular maps in a 3D space offers great benefits to the study of comparative genomics. The program is freely available （under an LGPL licence） at http：//sourceforge.net/projects/dgenometuner.
ISSN:1672-0229
2210-3244
DOI:10.1016/S1672-0229(08)60043-1