miRNA expression atlas in male rat
MicroRNAs (miRNAs) are small (~22 nucleotide) noncoding RNAs that play pivotal roles in regulation of gene expression. The value of miRNAs as circulating biomarkers is now broadly recognized; such tissue-specific biomarkers can be used to monitor tissue injury and several pathophysiological conditio...
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| Veröffentlicht in: | Scientific data 2014-05, Vol.1 (1), p.140005-140005, Article 140005 |
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| creator | Minami, Keiichi Uehara, Takeki Morikawa, Yuji Omura, Ko Kanki, Masayuki Horinouchi, Akira Ono, Atsushi Yamada, Hiroshi Ohno, Yasuo Urushidani, Tetsuro |
| description | MicroRNAs (miRNAs) are small (~22 nucleotide) noncoding RNAs that play pivotal roles in regulation of gene expression. The value of miRNAs as circulating biomarkers is now broadly recognized; such tissue-specific biomarkers can be used to monitor tissue injury and several pathophysiological conditions in organs. In addition, miRNA profiles of normal organs and tissues are important for obtaining a better understanding of the source of modulated miRNAs in blood and how those modulations reflect various physiological and toxicological conditions. This work was aimed at creating an miRNA atlas in rats, as part of a collaborative effort with the Toxicogenomics Informatics Project in Japan (TGP2). We analyzed genome-wide miRNA profiles of 55 different organs and tissues obtained from normal male rats using miRNA arrays. The work presented herein represents a comprehensive dataset derived from normal samples profiled in a single study. Here we present the whole dataset with miRNA profiles of multiple organs, as well as precise information on experimental procedures and organ-specific miRNAs identified in this dataset.
Design Type(s)
microRNA profiling by array design • organism part comparison design
Measurement Type(s)
microRNA profiling assay
Technology Type(s)
DNA microarray
Factor Type(s)
Organism Part • saline perfusion
Sample Characteristic(s)
Rattus norvegicus • liver • kidney • lung • cardiac atrium • interventricular septum • skin of body • cervical lymph node • mesenteric lymph node • sublingual gland • gland • parotid gland • thymus • trachea • thyroid gland • tongue • esophagus • forestomach • stomach glandular region • duodenum • jejunum • ileum • caecum • colon • rectum • pancreas • spleen • adrenal gland • urinary bladder • seminal vesicle • prostate gland ventral lobe • reproductive system • testis • epididymis • eye • Harderian gland • optic nerve • cerebral cortex • hippocampus • thalamus • cerebellum • medulla oblongata • Pituitary gland • cervical spinal cord • nervous system • lumbar spinal cord • femoral muscle • gastrocnemius • soleus muscle • muscle • bone marrow • aorta • vein • white adipose tissue • brown adipose tissue
Machine-accessible metadata file describing the reported data
(ISA-Tab format) |
| doi_str_mv | 10.1038/sdata.2014.5 |
| format | Article |
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Design Type(s)
microRNA profiling by array design • organism part comparison design
Measurement Type(s)
microRNA profiling assay
Technology Type(s)
DNA microarray
Factor Type(s)
Organism Part • saline perfusion
Sample Characteristic(s)
Rattus norvegicus • liver • kidney • lung • cardiac atrium • interventricular septum • skin of body • cervical lymph node • mesenteric lymph node • sublingual gland • gland • parotid gland • thymus • trachea • thyroid gland • tongue • esophagus • forestomach • stomach glandular region • duodenum • jejunum • ileum • caecum • colon • rectum • pancreas • spleen • adrenal gland • urinary bladder • seminal vesicle • prostate gland ventral lobe • reproductive system • testis • epididymis • eye • Harderian gland • optic nerve • cerebral cortex • hippocampus • thalamus • cerebellum • medulla oblongata • Pituitary gland • cervical spinal cord • nervous system • lumbar spinal cord • femoral muscle • gastrocnemius • soleus muscle • muscle • bone marrow • aorta • vein • white adipose tissue • brown adipose tissue
Machine-accessible metadata file describing the reported data
(ISA-Tab format)</description><identifier>ISSN: 2052-4463</identifier><identifier>EISSN: 2052-4463</identifier><identifier>DOI: 10.1038/sdata.2014.5</identifier><identifier>PMID: 25977763</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/114/2407 ; 631/154/570 ; Animals ; Data Descriptor ; Gene Expression ; Gene Expression Profiling ; Genome ; Humanities and Social Sciences ; Male ; MicroRNAs - genetics ; multidisciplinary ; Organ Specificity ; Rats ; Science</subject><ispartof>Scientific data, 2014-05, Vol.1 (1), p.140005-140005, Article 140005</ispartof><rights>The Author(s) 2014</rights><rights>Copyright Nature Publishing Group May 2014</rights><rights>Copyright © 2014, Macmillan Publishers Limited 2014 Macmillan Publishers Limited</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c549t-46461bdbd5b082f5c76ee2f7cc9a1656b62316b76b4df612e4b869027c4119a53</citedby><cites>FETCH-LOGICAL-c549t-46461bdbd5b082f5c76ee2f7cc9a1656b62316b76b4df612e4b869027c4119a53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4322570/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4322570/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,728,781,785,865,886,27929,27930,53796,53798</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25977763$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Minami, Keiichi</creatorcontrib><creatorcontrib>Uehara, Takeki</creatorcontrib><creatorcontrib>Morikawa, Yuji</creatorcontrib><creatorcontrib>Omura, Ko</creatorcontrib><creatorcontrib>Kanki, Masayuki</creatorcontrib><creatorcontrib>Horinouchi, Akira</creatorcontrib><creatorcontrib>Ono, Atsushi</creatorcontrib><creatorcontrib>Yamada, Hiroshi</creatorcontrib><creatorcontrib>Ohno, Yasuo</creatorcontrib><creatorcontrib>Urushidani, Tetsuro</creatorcontrib><title>miRNA expression atlas in male rat</title><title>Scientific data</title><addtitle>Sci Data</addtitle><addtitle>Sci Data</addtitle><description>MicroRNAs (miRNAs) are small (~22 nucleotide) noncoding RNAs that play pivotal roles in regulation of gene expression. The value of miRNAs as circulating biomarkers is now broadly recognized; such tissue-specific biomarkers can be used to monitor tissue injury and several pathophysiological conditions in organs. In addition, miRNA profiles of normal organs and tissues are important for obtaining a better understanding of the source of modulated miRNAs in blood and how those modulations reflect various physiological and toxicological conditions. This work was aimed at creating an miRNA atlas in rats, as part of a collaborative effort with the Toxicogenomics Informatics Project in Japan (TGP2). We analyzed genome-wide miRNA profiles of 55 different organs and tissues obtained from normal male rats using miRNA arrays. The work presented herein represents a comprehensive dataset derived from normal samples profiled in a single study. Here we present the whole dataset with miRNA profiles of multiple organs, as well as precise information on experimental procedures and organ-specific miRNAs identified in this dataset.
Design Type(s)
microRNA profiling by array design • organism part comparison design
Measurement Type(s)
microRNA profiling assay
Technology Type(s)
DNA microarray
Factor Type(s)
Organism Part • saline perfusion
Sample Characteristic(s)
Rattus norvegicus • liver • kidney • lung • cardiac atrium • interventricular septum • skin of body • cervical lymph node • mesenteric lymph node • sublingual gland • gland • parotid gland • thymus • trachea • thyroid gland • tongue • esophagus • forestomach • stomach glandular region • duodenum • jejunum • ileum • caecum • colon • rectum • pancreas • spleen • adrenal gland • urinary bladder • seminal vesicle • prostate gland ventral lobe • reproductive system • testis • epididymis • eye • Harderian gland • optic nerve • cerebral cortex • hippocampus • thalamus • cerebellum • medulla oblongata • Pituitary gland • cervical spinal cord • nervous system • lumbar spinal cord • femoral muscle • gastrocnemius • soleus muscle • muscle • bone marrow • aorta • vein • white adipose tissue • brown adipose tissue
Machine-accessible metadata file describing the reported data
(ISA-Tab format)</description><subject>631/114/2407</subject><subject>631/154/570</subject><subject>Animals</subject><subject>Data Descriptor</subject><subject>Gene Expression</subject><subject>Gene Expression Profiling</subject><subject>Genome</subject><subject>Humanities and Social Sciences</subject><subject>Male</subject><subject>MicroRNAs - genetics</subject><subject>multidisciplinary</subject><subject>Organ Specificity</subject><subject>Rats</subject><subject>Science</subject><issn>2052-4463</issn><issn>2052-4463</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkctLw0AQhxdRbKm9eZagFw-m7uwzuQil-AJRED0vu8mmpuRRdxPR_97E1lJF8DQL8_HNzP4QOgQ8AUyjc5_qRk8IBjbhO2hIMCchY4Lubr0HaOz9AmMMlGEu8T4aEB5LKQUdouMyf7yfBvZ96az3eV0Fuim0D_IqKHVhA6ebA7SX6cLb8bqO0PPV5dPsJrx7uL6dTe_ChLO4CZlgAkxqUm5wRDKeSGEtyWSSxBoEF0YQCsJIYViaCSCWmUjEmMiEAcSa0xG6WHmXrSltmtiqcbpQS5eX2n2oWufqZ6fKX9S8flOMEtLd1QlO1wJXv7bWN6rMfWKLQle2br2CCEeSRpLE_6MiAiIYF_1aJ7_QRd26qvsJBTLGABK47KizFZW42ntns83egFUflfqKSvVRqV56tH3rBv4OpgPCFeC7VjW3bmvqX8JPBuecPQ</recordid><startdate>20140527</startdate><enddate>20140527</enddate><creator>Minami, Keiichi</creator><creator>Uehara, Takeki</creator><creator>Morikawa, Yuji</creator><creator>Omura, Ko</creator><creator>Kanki, Masayuki</creator><creator>Horinouchi, Akira</creator><creator>Ono, Atsushi</creator><creator>Yamada, Hiroshi</creator><creator>Ohno, Yasuo</creator><creator>Urushidani, Tetsuro</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>7TM</scope><scope>5PM</scope></search><sort><creationdate>20140527</creationdate><title>miRNA expression atlas in male rat</title><author>Minami, Keiichi ; 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The value of miRNAs as circulating biomarkers is now broadly recognized; such tissue-specific biomarkers can be used to monitor tissue injury and several pathophysiological conditions in organs. In addition, miRNA profiles of normal organs and tissues are important for obtaining a better understanding of the source of modulated miRNAs in blood and how those modulations reflect various physiological and toxicological conditions. This work was aimed at creating an miRNA atlas in rats, as part of a collaborative effort with the Toxicogenomics Informatics Project in Japan (TGP2). We analyzed genome-wide miRNA profiles of 55 different organs and tissues obtained from normal male rats using miRNA arrays. The work presented herein represents a comprehensive dataset derived from normal samples profiled in a single study. Here we present the whole dataset with miRNA profiles of multiple organs, as well as precise information on experimental procedures and organ-specific miRNAs identified in this dataset.
Design Type(s)
microRNA profiling by array design • organism part comparison design
Measurement Type(s)
microRNA profiling assay
Technology Type(s)
DNA microarray
Factor Type(s)
Organism Part • saline perfusion
Sample Characteristic(s)
Rattus norvegicus • liver • kidney • lung • cardiac atrium • interventricular septum • skin of body • cervical lymph node • mesenteric lymph node • sublingual gland • gland • parotid gland • thymus • trachea • thyroid gland • tongue • esophagus • forestomach • stomach glandular region • duodenum • jejunum • ileum • caecum • colon • rectum • pancreas • spleen • adrenal gland • urinary bladder • seminal vesicle • prostate gland ventral lobe • reproductive system • testis • epididymis • eye • Harderian gland • optic nerve • cerebral cortex • hippocampus • thalamus • cerebellum • medulla oblongata • Pituitary gland • cervical spinal cord • nervous system • lumbar spinal cord • femoral muscle • gastrocnemius • soleus muscle • muscle • bone marrow • aorta • vein • white adipose tissue • brown adipose tissue
Machine-accessible metadata file describing the reported data
(ISA-Tab format)</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>25977763</pmid><doi>10.1038/sdata.2014.5</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 2052-4463 |
| ispartof | Scientific data, 2014-05, Vol.1 (1), p.140005-140005, Article 140005 |
| issn | 2052-4463 2052-4463 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4322570 |
| source | MEDLINE; DOAJ Directory of Open Access Journals; PubMed Central Open Access; EZB-FREE-00999 freely available EZB journals; PubMed Central |
| subjects | 631/114/2407 631/154/570 Animals Data Descriptor Gene Expression Gene Expression Profiling Genome Humanities and Social Sciences Male MicroRNAs - genetics multidisciplinary Organ Specificity Rats Science |
| title | miRNA expression atlas in male rat |
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