Gateways to the FANTOM5 promoter level mammalian expression atlas

The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a cen...

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Veröffentlicht in:	Genome Biology 2015-01, Vol.16 (1), p.22-22, Article 22
Hauptverfasser:	Lizio, Marina, Harshbarger, Jayson, Shimoji, Hisashi, Severin, Jessica, Kasukawa, Takeya, Sahin, Serkan, Abugessaisa, Imad, Fukuda, Shiro, Hori, Fumi, Ishikawa-Kato, Sachi, Mungall, Christopher J, Arner, Erik, Baillie, J Kenneth, Bertin, Nicolas, Bono, Hidemasa, de Hoon, Michiel, Diehl, Alexander D, Dimont, Emmanuel, Freeman, Tom C, Fujieda, Kaori, Hide, Winston, Kaliyaperumal, Rajaram, Katayama, Toshiaki, Lassmann, Timo, Meehan, Terrence F, Nishikata, Koro, Ono, Hiromasa, Rehli, Michael, Sandelin, Albin, Schultes, Erik A, 't Hoen, Peter A C, Tatum, Zuotian, Thompson, Mark, Toyoda, Tetsuro, Wright, Derek W, Daub, Carsten O, Itoh, Masayoshi, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R R, Kawaji, Hideya
Format:	Artikel
Sprache:	eng
Schlagworte:	Animals BASIC BIOLOGICAL SCIENCES Bioinformatics Cell lines Computational Biology - methods Databases, Genetic Datasets as Topic DNA binding proteins Enhancers Gene expression Gene Expression Profiling Genes Genetic transcription Genomes Genomics Genomics - methods Humans Internet Linked Data MATHEMATICS AND COMPUTING Mice Names Ontology Physiological aspects promoter regions Promoter Regions, Genetic Researchers Semantic web Software transcription (genetics) Transcription factors Transcription initiation Transcription Initiation, Genetic Transcriptome User-Computer Interface
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Beschreibung
Zusammenfassung:	The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.
ISSN:	1465-6906 1474-7596 1474-760X 1474-760X 1465-6906 1465-6914
DOI:	10.1186/s13059-014-0560-6