Evaluating the performance of parallel subsurface simulators: An illustrative example with PFLOTRAN
To better inform the subsurface scientist on the expected performance of parallel simulators, this work investigates performance of the reactive multiphase flow and multicomponent biogeochemical transport code PFLOTRAN as it is applied to several realistic modeling scenarios run on the Jaguar superc...
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Veröffentlicht in: | Water resources research 2014-01, Vol.50 (1), p.208-228 |
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description | To better inform the subsurface scientist on the expected performance of parallel simulators, this work investigates performance of the reactive multiphase flow and multicomponent biogeochemical transport code PFLOTRAN as it is applied to several realistic modeling scenarios run on the Jaguar supercomputer. After a brief introduction to the code's parallel layout and code design, PFLOTRAN's parallel performance (measured through strong and weak scalability analyses) is evaluated in the context of conceptual model layout, software and algorithmic design, and known hardware limitations. PFLOTRAN scales well (with regard to strong scaling) for three realistic problem scenarios: (1) in situ leaching of copper from a mineral ore deposit within a 5‐spot flow regime, (2) transient flow and solute transport within a regional doublet, and (3) a real‐world problem involving uranium surface complexation within a heterogeneous and extremely dynamic variably saturated flow field. Weak scalability is discussed in detail for the regional doublet problem, and several difficulties with its interpretation are noted.
Key Points
Scientists must better understand the benefit of high-performance computing
PFLOTRAN's scalability is exceptional on multiple realistic subsurface problems
Understanding PFLOTRAN's scalability better educates on expected performance |
doi_str_mv | 10.1002/2012WR013483 |
format | Article |
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Key Points
Scientists must better understand the benefit of high-performance computing
PFLOTRAN's scalability is exceptional on multiple realistic subsurface problems
Understanding PFLOTRAN's scalability better educates on expected performance</description><identifier>ISSN: 0043-1397</identifier><identifier>EISSN: 1944-7973</identifier><identifier>DOI: 10.1002/2012WR013483</identifier><identifier>PMID: 25506097</identifier><language>eng</language><publisher>United States: Blackwell Publishing Ltd</publisher><subject>biogeochemical transport ; groundwater flow ; high performance computing ; Leaching ; Multiphase flow ; Saturated flow ; Solute transport ; Supercomputers ; Uranium</subject><ispartof>Water resources research, 2014-01, Vol.50 (1), p.208-228</ispartof><rights>2013. The Authors. Water Resources Research published by Wiley on behalf of the American Geophysical Union.</rights><rights>2013. The Authors. Water Resources Research published by Wiley on behalf of the American Geophysical Union. 2013</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a5937-29069c4acff5e50daeff256fdd181464a4449dfa9c89ad7d9dc635c21c4901593</citedby><cites>FETCH-LOGICAL-a5937-29069c4acff5e50daeff256fdd181464a4449dfa9c89ad7d9dc635c21c4901593</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2F2012WR013483$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2F2012WR013483$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,881,1411,11493,27901,27902,45550,45551,46443,46867</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25506097$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hammond, G. E.</creatorcontrib><creatorcontrib>Lichtner, P. C.</creatorcontrib><creatorcontrib>Mills, R. T.</creatorcontrib><title>Evaluating the performance of parallel subsurface simulators: An illustrative example with PFLOTRAN</title><title>Water resources research</title><addtitle>Water Resour. Res</addtitle><description>To better inform the subsurface scientist on the expected performance of parallel simulators, this work investigates performance of the reactive multiphase flow and multicomponent biogeochemical transport code PFLOTRAN as it is applied to several realistic modeling scenarios run on the Jaguar supercomputer. After a brief introduction to the code's parallel layout and code design, PFLOTRAN's parallel performance (measured through strong and weak scalability analyses) is evaluated in the context of conceptual model layout, software and algorithmic design, and known hardware limitations. PFLOTRAN scales well (with regard to strong scaling) for three realistic problem scenarios: (1) in situ leaching of copper from a mineral ore deposit within a 5‐spot flow regime, (2) transient flow and solute transport within a regional doublet, and (3) a real‐world problem involving uranium surface complexation within a heterogeneous and extremely dynamic variably saturated flow field. Weak scalability is discussed in detail for the regional doublet problem, and several difficulties with its interpretation are noted.
Key Points
Scientists must better understand the benefit of high-performance computing
PFLOTRAN's scalability is exceptional on multiple realistic subsurface problems
Understanding PFLOTRAN's scalability better educates on expected performance</description><subject>biogeochemical transport</subject><subject>groundwater flow</subject><subject>high performance computing</subject><subject>Leaching</subject><subject>Multiphase flow</subject><subject>Saturated flow</subject><subject>Solute transport</subject><subject>Supercomputers</subject><subject>Uranium</subject><issn>0043-1397</issn><issn>1944-7973</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><recordid>eNqFkUtvEzEURi0EomlhxxpZYsOiA347ZoEUorZQohZFRVlarsduXDwP7Jm0_fcYUqLCAlaW7HOPrr8PgBcYvcEIkbcEYbJaIkzZlD4CE6wYq6SS9DGYIMRohamSe2A_52uEMONCPgV7hHMkkJITYI82Jo5mCO0VHNYO9i75LjWmtQ52HvYmmRhdhHm8zGPyplzn0IzRDF3K7-CshSHGMQ-pKDYOulvT9NHBmzCs4ZfjxfnFcnb2DDzxJmb3_P48AF-Pjy7mH6vF-cmn-WxRGa6orIhCQllmrPfccVQb5z3hwtc1nmImmGGMqdobZafK1LJWtRWUW4ItUwgXxQF4v_X242XjauvaslbUfQqNSXe6M0H_-dKGtb7qNpoRLrmURfD6XpC676PLg25Cti5G07puzBpPiSixKYz_j3KBMBaIkoK--gu97sbUliQ0FoygqSScFupwS9nU5Zyc3-2Nkf5ZtH5YdMFfPvzrDv7dbAHoFrgJ0d39U6ZXy_mSIPErgWo7FfLgbndTJn3TQlLJ9ersRMvP5PSDmhN9Sn8ASKjBrA</recordid><startdate>201401</startdate><enddate>201401</enddate><creator>Hammond, G. 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E.</au><au>Lichtner, P. C.</au><au>Mills, R. T.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evaluating the performance of parallel subsurface simulators: An illustrative example with PFLOTRAN</atitle><jtitle>Water resources research</jtitle><addtitle>Water Resour. Res</addtitle><date>2014-01</date><risdate>2014</risdate><volume>50</volume><issue>1</issue><spage>208</spage><epage>228</epage><pages>208-228</pages><issn>0043-1397</issn><eissn>1944-7973</eissn><abstract>To better inform the subsurface scientist on the expected performance of parallel simulators, this work investigates performance of the reactive multiphase flow and multicomponent biogeochemical transport code PFLOTRAN as it is applied to several realistic modeling scenarios run on the Jaguar supercomputer. After a brief introduction to the code's parallel layout and code design, PFLOTRAN's parallel performance (measured through strong and weak scalability analyses) is evaluated in the context of conceptual model layout, software and algorithmic design, and known hardware limitations. PFLOTRAN scales well (with regard to strong scaling) for three realistic problem scenarios: (1) in situ leaching of copper from a mineral ore deposit within a 5‐spot flow regime, (2) transient flow and solute transport within a regional doublet, and (3) a real‐world problem involving uranium surface complexation within a heterogeneous and extremely dynamic variably saturated flow field. Weak scalability is discussed in detail for the regional doublet problem, and several difficulties with its interpretation are noted.
Key Points
Scientists must better understand the benefit of high-performance computing
PFLOTRAN's scalability is exceptional on multiple realistic subsurface problems
Understanding PFLOTRAN's scalability better educates on expected performance</abstract><cop>United States</cop><pub>Blackwell Publishing Ltd</pub><pmid>25506097</pmid><doi>10.1002/2012WR013483</doi><tpages>21</tpages><oa>free_for_read</oa></addata></record> |
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source | Wiley-Blackwell AGU Digital Library; Wiley Online Library Journals Frontfile Complete; EZB-FREE-00999 freely available EZB journals |
subjects | biogeochemical transport groundwater flow high performance computing Leaching Multiphase flow Saturated flow Solute transport Supercomputers Uranium |
title | Evaluating the performance of parallel subsurface simulators: An illustrative example with PFLOTRAN |
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