Expression of miR-15/107 Family MicroRNAs in Human Tissues and Cultured Rat Brain Cells

The miR-15/107 family comprises a group of 10 paralogous microRNAs (miRNAs),sharing a 5' AGCAGC sequence.These miRNAs have overlapping targets.In order to characterize the expression of miR-15/107 family miRNAs,we employed customized TaqMan Low-Density micro-fluid PCR-array to investigate the expres...

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Veröffentlicht in:Genomics, proteomics & bioinformatics proteomics & bioinformatics, 2014-02, Vol.12 (1), p.19-30
Hauptverfasser: Wang, Wang-Xia, Danaher, Robert J., Miller, Craig S., Berger, Joseph R., Nubia, Vega G., Wilfred, Bernard S., Neltner, Janna H., Norris, Christopher M., Nelson, Peter T.
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Sprache:eng
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Zusammenfassung:The miR-15/107 family comprises a group of 10 paralogous microRNAs (miRNAs),sharing a 5' AGCAGC sequence.These miRNAs have overlapping targets.In order to characterize the expression of miR-15/107 family miRNAs,we employed customized TaqMan Low-Density micro-fluid PCR-array to investigate the expression of miR-15/107 family members,and other selected miRNAs,in 11 human tissues obtained at autopsy including the cerebral cortex,frontal cortex,primary visual cortex,thalamus,heart,lung,liver,kidney,spleen,stomach and skeletal muscle.miR-103,miR-195 and miR-497 were expressed at similar levels across various tissues,whereas miR-107 is enriched in brain samples.We also examined the expression patterns of evolutionarily conserved miR-15/107 miRNAs in three distinct primary rat brain cell preparations (enriched for cortical neurons,astrocytes and microglia,respectively).In primary cultures of rat brain cells,several members of the miR-15/107 family are enriched in neurons compared to other cell types in the central nervous system (CNS).In addition to mature miRNAs,we also examined the expression of precursors (pri-miRNAs).Our data suggested a generally poor correlation between the expression of mature miRNAs and their precursors.In summary,we provide a detailed study of the tissue and cell type-specific expression profile of this highly expressed and phylogenetically conserved family of miRNA genes.
ISSN:1672-0229
2210-3244
DOI:10.1016/j.gpb.2013.10.003