IMG/M: the integrated metagenome data management and comparative analysis system

IMG/M: the integrated metagenome data management and comparative analysis system

The integrated microbial genomes and metagenomes (IMG/M) system provides support for comparative analysis of microbial community aggregate genomes (metagenomes) in a comprehensive integrated context. IMG/M integrates metagenome data sets with isolate microbial genomes from the IMG system. IMG/M'...

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Veröffentlicht in:Nucleic acids research 2012-01, Vol.40 (D1), p.D123-D129
Hauptverfasser: Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Ratner, Anna, Jacob, Biju, Pati, Amrita, Huntemann, Marcel, Liolios, Konstantinos, Pagani, Ioanna, Anderson, Iain, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Format: Artikel
Sprache:eng
Schlagworte:
Data processing
Database Management Systems
Databases, Genetic
Eukaryota - genetics
Genome, Archaeal
Genome, Bacterial
Genome, Viral
Genomes
Metagenome
Metagenomics
Plasmids - genetics
Reviews
Systems Integration
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Beschreibung
Zusammenfassung:The integrated microbial genomes and metagenomes (IMG/M) system provides support for comparative analysis of microbial community aggregate genomes (metagenomes) in a comprehensive integrated context. IMG/M integrates metagenome data sets with isolate microbial genomes from the IMG system. IMG/M's data content and analytical capabilities have been extended through regular updates since its first release in 2007. IMG/M is available at http://img.jgi.doe.gov/m. A companion IMG/M systems provide support for annotation and expert review of unpublished metagenomic data sets (IMG/M ER: http://img.jgi.doe.gov/mer).
ISSN:0305-1048
1362-4962
DOI:10.1093/nar/gkr975