In Silico Analysis of Transcription Factor Repertoires and Prediction of Stress-Responsive Transcription Factors from Six Major Gramineae Plants

The interactions between transcription factors (TFs) and cis-regulatory DNA sequences control gene expression, constituting the essential functional linkages of gene regulatory networks. The aim of this study is to identify and integrate all putative TFs from six grass species: Brachypodium distachy...

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Veröffentlicht in:	DNA research 2011-10, Vol.18 (5), p.321-332
Hauptverfasser:	Mochida, Keiichi, Yoshida, Takuhiro, Sakurai, Tetsuya, Yamaguchi-Shinozaki, Kazuko, Shinozaki, Kazuo, Tran, Lam-Son Phan
Format:	Artikel
Sprache:	eng
Schlagworte:	abiotic stress barley BASIC BIOLOGICAL SCIENCES Brachypodium distachyon Cereals chemistry cis-motif classification Computational Biology Computational Biology - methods Computer programs corn Crops Data processing Databases, Genetic Enhancer Elements, Genetic Enhancer Elements, Genetic - genetics Evolution Gene expression Gene Regulatory Networks Genetic resources genetics Genetics & Heredity Genome, Plant Genomics grain crops Grasses Heat-Shock Response Hordeum vulgare Internet metabolism methods Nucleotide sequence Oryza sativa Plant Proteins Plant Proteins - chemistry Plant Proteins - genetics Plant Proteins - metabolism Poaceae Poaceae - classification Poaceae - genetics Poaceae - metabolism prediction Predictive Value of Tests promoter regions Promoters regulator genes rice Sorghum Species Specificity transcription factor Transcription factors Transcription Factors - chemistry Transcription Factors - genetics Transcription Factors - metabolism Triticum aestivum User-Computer Interface wheat Zea mays
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