On the Distribution of Protein Refractive Index Increments

The protein refractive index increment, dn/dc, is an important parameter underlying the concentration determination and the biophysical characterization of proteins and protein complexes in many techniques. In this study, we examine the widely used assumption that most proteins have dn/dc values in...

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Veröffentlicht in:Biophysical journal 2011-05, Vol.100 (9), p.2309-2317
Hauptverfasser: Zhao, Huaying, Brown, Patrick H., Schuck, Peter
Format: Artikel
Sprache:eng
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Zusammenfassung:The protein refractive index increment, dn/dc, is an important parameter underlying the concentration determination and the biophysical characterization of proteins and protein complexes in many techniques. In this study, we examine the widely used assumption that most proteins have dn/dc values in a very narrow range, and reappraise the prediction of dn/dc of unmodified proteins based on their amino acid composition. Applying this approach in large scale to the entire set of known and predicted human proteins, we obtain, for the first time, to our knowledge, an estimate of the full distribution of protein dn/dc values. The distribution is close to Gaussian with a mean of 0.190 ml/g (for unmodified proteins at 589 nm) and a standard deviation of 0.003 ml/g. However, small proteins 
ISSN:0006-3495
1542-0086
DOI:10.1016/j.bpj.2011.03.004