Pharmacogenetic Predictors of Statin-Mediated Low-Density Lipoprotein Cholesterol Reduction and Dose Response

Pharmacogenetic Predictors of Statin-Mediated Low-Density Lipoprotein Cholesterol Reduction and Dose Response Deepak Voora, MD ; Svati H. Shah, MD, MHS ; Carol R. Reed, MD ; Jun Zhai, PhD ; David R. Crosslin, MS ; Chad Messer, PhD ; Benjamin A. Salisbury, PhD and Geoffrey S. Ginsburg, MD, PhD From the Division of Cardiovascular Medicine (D.V., S.H.S., G.S.G.), the Institute for Genome & Science Policy (J.Z., G.S.G.), and the Center for Human Genetics (S.H.S., D.R.C.), Duke University, Durham, NC; PGxHealth (C.R.R., B.A.S.), LLC, New Haven, Conn; and Formerly of Genaissance Pharmaceuticals (C.M.), New Haven, Conn. Correspondence to Geoffrey S. Ginsburg, MD, PhD, IGSP Center for Genomic Medicine, 2117 CIEMAS, 101 Science Drive, Duke University, DUMC Box 3382, Durham, NC 27708. E-mail geoffrey.ginsburg{at}duke.edu Received May 29, 2008; accepted October 20, 2008. Background— There is interindividual variation in low-density lipoprotein cholesterol (LDLc) lowering by statins and limited study into the genetic associations of the dose dependant LDLc lowering by statins. Methods and Results— Five hundred nine patients with hyperlipidemia were randomly assigned atorvastatin 10 mg, simvastatin 20 mg, or pravastatin 10 mg (low-dose phase) followed by 80 mg, 80 mg, and 40 mg (high-dose phase), respectively. Thirty-one genes in statin, cholesterol, and lipoprotein metabolism were sequenced and 489 single nucleotide polymorphisms with minor allele frequencies >2% were tested for associations with percentage LDLc lowering at low doses using multivariable adjusted general linear regression. Significant associations from the analysis at low dose were then repeated at high-dose statins. At low doses, only 1 single nucleotide polymorphism met our experiment-wide significance level, ABCA1 rs12003906. Twenty-six subjects carried the minor allele of rs12003906, which was associated with an attenuated LDLc reduction (LDLc reduction in carriers versus noncarriers –24.1±2.6% versus –32.2±1.5%; P =0.0001). In addition, we replicated the association with the APOE 3 allele and a reduced LDLc reduction. At high doses, carriers of the minor allele of ABCA1 rs12003906 and the APOE 3 allele improved their LDLc reduction but continued to have a diminished LDLc reduction compared with noncarriers (–30.5±4.0% versus –42.0±2.4%; P =0.005) and (–38.5±1.9% versus –45.3±2.8%; P =0.009), respectively. Conclusions— An intronic single nucleotide polymorphism in ABCA1 and the APOE 3 allele are as