Multi-species integrative biclustering

We describe an algorithm, multi-species cMonkey, for the simultaneous biclustering of heterogeneous multiple-species data collections and apply the algorithm to a group of bacteria containing Bacillus subtilis, Bacillus anthracis, and Listeria monocytogenes. The algorithm reveals evolutionary insigh...

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Veröffentlicht in:Genome Biology (Online Edition) 2010-09, Vol.11 (9), p.R96-R96, Article R96
Hauptverfasser: Waltman, Peter, Kacmarczyk, Thadeous, Bate, Ashley R, Kearns, Daniel B, Reiss, David J, Eichenberger, Patrick, Bonneau, Richard
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Sprache:eng
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Zusammenfassung:We describe an algorithm, multi-species cMonkey, for the simultaneous biclustering of heterogeneous multiple-species data collections and apply the algorithm to a group of bacteria containing Bacillus subtilis, Bacillus anthracis, and Listeria monocytogenes. The algorithm reveals evolutionary insights into the surprisingly high degree of conservation of regulatory modules across these three species and allows data and insights from well-studied organisms to complement the analysis of related but less well studied organisms.
ISSN:1474-760X
1465-6906
1474-760X
1465-6914
DOI:10.1186/gb-2010-11-9-r96