Payao: a community platform for SBML pathway model curation

Payao is a community-based, collaborative web service platform for gene-regulatory and biochemical pathway model curation. The system combines Web 2.0 technologies and online model visualization functions to enable a collaborative community to annotate and curate biological models. Payao reads the m...

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Veröffentlicht in:Bioinformatics 2010-05, Vol.26 (10), p.1381-1383
Hauptverfasser: Matsuoka, Yukiko, Ghosh, Samik, Kikuchi, Norihiro, Kitano, Hiroaki
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Sprache:eng
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Zusammenfassung:Payao is a community-based, collaborative web service platform for gene-regulatory and biochemical pathway model curation. The system combines Web 2.0 technologies and online model visualization functions to enable a collaborative community to annotate and curate biological models. Payao reads the models in Systems Biology Markup Language format, displays them with CellDesigner, a process diagram editor, which complies with the Systems Biology Graphical Notation, and provides an interface for model enrichment (adding tags and comments to the models) for the access-controlled community members. Availability and implementation: Freely available for model curation service at http://www.payaologue.org. Web site implemented in Seaser Framework 2.0 with S2Flex2, MySQL 5.0 and Tomcat 5.5, with all major browsers supported. Contact: kitano@sbi.jp
ISSN:1367-4803
1460-2059
1367-4811
DOI:10.1093/bioinformatics/btq143