Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum

Little is known about the structure and distinguishing features of core promoters in Plasmodium falciparum. In this work, we describe the first method to computationally identify core promoters in this AT-rich genome. This prediction algorithm uses solely DNA physicochemical properties as descriptor...

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Veröffentlicht in:Genome Biology (Online Edition) 2008-12, Vol.9 (12), p.R178-2040, Article R178
Hauptverfasser: Brick, Kevin, Watanabe, Junichi, Pizzi, Elisabetta
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Sprache:eng
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Zusammenfassung:Little is known about the structure and distinguishing features of core promoters in Plasmodium falciparum. In this work, we describe the first method to computationally identify core promoters in this AT-rich genome. This prediction algorithm uses solely DNA physicochemical properties as descriptors. Our results add to a growing body of evidence that a physicochemical code for eukaryotic genomes plays a crucial role in core promoter recognition.
ISSN:1474-760X
1465-6906
1474-760X
1465-6914
DOI:10.1186/gb-2008-9-12-r178