Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN

In this paper we present several web-based tools to identify conserved patterns in sequences. In particular we present details on the functionality of PROMO version 2.0, a program for the prediction of transcription factor binding site in a single sequence or in a group of related sequences and, of...

Ausführliche Beschreibung

Gespeichert in:

Bibliographische Detailangaben
Veröffentlicht in:	Nucleic acids research 2003-07, Vol.31 (13), p.3651-3653
Hauptverfasser:	Farré, Domènec, Roset, Romà, Huerta, Mario, Adsuara, José E., Roselló, Llorenç, Albà, M. Mar, Messeguer, Xavier
Format:	Artikel
Sprache:	eng
Schlagworte:	Animals Binding Sites Computer Graphics Conserved Sequence Genome Humans Internet Regulatory Sequences, Nucleic Acid Sequence Alignment Sequence Analysis, DNA - methods Software Transcription Factors
Online-Zugang:	Volltext
Tags:	Tag hinzufügen Keine Tags, Fügen Sie den ersten Tag hinzu!

Beschreibung
Zusammenfassung:	In this paper we present several web-based tools to identify conserved patterns in sequences. In particular we present details on the functionality of PROMO version 2.0, a program for the prediction of transcription factor binding site in a single sequence or in a group of related sequences and, of MALGEN, a tool to visualize sequence correspondences among long DNA sequences. The web tools and associated documentation can be accessed at http://www.lsi.upc.es/~alggen (RESEARCH link).
ISSN:	0305-1048 1362-4962 1362-4962
DOI:	10.1093/nar/gkg605