TRAMPLE: the transmembrane protein labelling environment

TRAMPLE (http://gpcr.biocomp.unibo.it/biodec/) is a web application server dedicated to the detection and the annotation of transmembrane protein sequences. TRAMPLE includes different state-of-the-art algorithms for the prediction of signal peptides, transmembrane segments (both beta-strands and alp...

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Veröffentlicht in:Nucleic acids research 2005-07, Vol.33 (suppl-2), p.W198-W201
Hauptverfasser: Fariselli, Piero, Finelli, Michele, Rossi, Ivan, Amico, Mauro, Zauli, Andrea, Martelli, Pier Luigi, Casadio, Rita
Format: Artikel
Sprache:eng
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Zusammenfassung:TRAMPLE (http://gpcr.biocomp.unibo.it/biodec/) is a web application server dedicated to the detection and the annotation of transmembrane protein sequences. TRAMPLE includes different state-of-the-art algorithms for the prediction of signal peptides, transmembrane segments (both beta-strands and alpha-helices), secondary structure and fast fold recognition. TRAMPLE also includes a complete content management system to manage the results of the predictions. Each user of the server has his/her own workplace, where the data can be stored, organized, accessed and annotated with documents through a simple web-based interface. In this manner, TRAMPLE significantly improves usability with respect to other more traditional web servers.
ISSN:0305-1048
1362-4962
DOI:10.1093/nar/gki440