Genetic Diversity of the Species of the Genus Deschampsia P.Beauv. (Poaceae) Based on the Analysis of the ITS Region: Polymorphism Proves Distant Hybridization
The species of the genus are difficult for identification, and the genus is difficult for taxonomic treatment. The regions of 35S rRNA genes were studied for the species of the genus of different geographical origin with a method of sequencing by Sanger (ITS1-5.8S rRNA gene-ITS2, 14 species) and wit...
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| Veröffentlicht in: | International journal of molecular sciences 2024-11, Vol.25 (21), p.11348 |
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| creator | Gnutikov, Alexander A Nosov, Nikolai N Muravenko, Olga V Amosova, Alexandra V Shneyer, Victoria S Loskutov, Igor G Punina, Elizaveta O Rodionov, Alexander V |
| description | The species of the genus
are difficult for identification, and the genus is difficult for taxonomic treatment. The regions of 35S rRNA genes were studied for the species of the genus
of different geographical origin with a method of sequencing by Sanger (ITS1-5.8S rRNA gene-ITS2, 14 species) and with a method of a locus-specific next-generation sequencing (NGS) on the Illumina platform (ITS1-5.8S rRNA, 7 species). All species of
formed one clade; the species, referred by some authors on the basis of morphological characters to the species
s.l., entered one subclade. Subantarctic species formed a separate subclade and their ribotypes formed their own subnetwork.
, earlier referred to
, entered the other clade, though this species contains some ribotypes common with some
species.
and related mountain species have their own specific ribotype groups. On the network of the ribotypes, one can see that
from Great Britain forms a network with some species, but
from the USA forms its own network. Ribotype analysis of each sample revealed traces of introgression with
in
and with
and probable introgression of Northern and subantarctic species. |
| doi_str_mv | 10.3390/ijms252111348 |
| format | Article |
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are difficult for identification, and the genus is difficult for taxonomic treatment. The regions of 35S rRNA genes were studied for the species of the genus
of different geographical origin with a method of sequencing by Sanger (ITS1-5.8S rRNA gene-ITS2, 14 species) and with a method of a locus-specific next-generation sequencing (NGS) on the Illumina platform (ITS1-5.8S rRNA, 7 species). All species of
formed one clade; the species, referred by some authors on the basis of morphological characters to the species
s.l., entered one subclade. Subantarctic species formed a separate subclade and their ribotypes formed their own subnetwork.
, earlier referred to
, entered the other clade, though this species contains some ribotypes common with some
species.
and related mountain species have their own specific ribotype groups. On the network of the ribotypes, one can see that
from Great Britain forms a network with some species, but
from the USA forms its own network. Ribotype analysis of each sample revealed traces of introgression with
in
and with
and probable introgression of Northern and subantarctic species.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms252111348</identifier><identifier>PMID: 39518900</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Biological diversity ; DNA, Plant - genetics ; DNA, Ribosomal Spacer - genetics ; Genetic Variation ; High-Throughput Nucleotide Sequencing - methods ; Hybridization ; Hybridization, Genetic ; Morphology ; Phylogenetics ; Phylogeny ; Poaceae - classification ; Poaceae - genetics ; Polymorphism ; Polymorphism, Genetic ; RNA</subject><ispartof>International journal of molecular sciences, 2024-11, Vol.25 (21), p.11348</ispartof><rights>COPYRIGHT 2024 MDPI AG</rights><rights>2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2024 by the authors. 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c369t-279636e8c4df92fefcd7257bb7dbdc6980920ed0d6fd761844d5d813f2777e003</cites><orcidid>0000-0002-5208-6702 ; 0000-0002-5264-5594 ; 0000-0003-3150-8598</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11545786/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11545786/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,728,781,785,886,27929,27930,53796,53798</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39518900$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gnutikov, Alexander A</creatorcontrib><creatorcontrib>Nosov, Nikolai N</creatorcontrib><creatorcontrib>Muravenko, Olga V</creatorcontrib><creatorcontrib>Amosova, Alexandra V</creatorcontrib><creatorcontrib>Shneyer, Victoria S</creatorcontrib><creatorcontrib>Loskutov, Igor G</creatorcontrib><creatorcontrib>Punina, Elizaveta O</creatorcontrib><creatorcontrib>Rodionov, Alexander V</creatorcontrib><title>Genetic Diversity of the Species of the Genus Deschampsia P.Beauv. (Poaceae) Based on the Analysis of the ITS Region: Polymorphism Proves Distant Hybridization</title><title>International journal of molecular sciences</title><addtitle>Int J Mol Sci</addtitle><description>The species of the genus
are difficult for identification, and the genus is difficult for taxonomic treatment. The regions of 35S rRNA genes were studied for the species of the genus
of different geographical origin with a method of sequencing by Sanger (ITS1-5.8S rRNA gene-ITS2, 14 species) and with a method of a locus-specific next-generation sequencing (NGS) on the Illumina platform (ITS1-5.8S rRNA, 7 species). All species of
formed one clade; the species, referred by some authors on the basis of morphological characters to the species
s.l., entered one subclade. Subantarctic species formed a separate subclade and their ribotypes formed their own subnetwork.
, earlier referred to
, entered the other clade, though this species contains some ribotypes common with some
species.
and related mountain species have their own specific ribotype groups. On the network of the ribotypes, one can see that
from Great Britain forms a network with some species, but
from the USA forms its own network. Ribotype analysis of each sample revealed traces of introgression with
in
and with
and probable introgression of Northern and subantarctic species.</description><subject>Biological diversity</subject><subject>DNA, Plant - genetics</subject><subject>DNA, Ribosomal Spacer - genetics</subject><subject>Genetic Variation</subject><subject>High-Throughput Nucleotide Sequencing - methods</subject><subject>Hybridization</subject><subject>Hybridization, Genetic</subject><subject>Morphology</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Poaceae - classification</subject><subject>Poaceae - genetics</subject><subject>Polymorphism</subject><subject>Polymorphism, Genetic</subject><subject>RNA</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNptkktv1DAUhSMEoqWwZIsssSmLDH4kdsIGTTvQVqrEiJa15dg3Mx4lcbCTkcKf4a_i6WPoIOSFfe3vnCtfnSR5S_CMsRJ_tJs20JwSQlhWPEuOSUZpijEXz5-cj5JXIWwwpozm5cvkiJU5KUqMj5PfF9DBYDVa2C34YIcJuRoNa0A3PWgL4bGM3BjQAoJeq7YPVqHl7AzUuJ2h06VTGhR8QGcqgEGuu1PMO9VMwe4drm5v0HdYWdd9QkvXTK3z_dqGFi2928ZGCxsG1Q3ocqq8NfaXGiL6OnlRqybAm4f9JPnx9cvt-WV6_e3i6nx-nWrGyyGlouSMQ6EzU5e0hlobQXNRVcJURvOywCXFYLDhtRGcFFlmclMQVlMhBGDMTpLP9779WLVgNHSDV43svW2Vn6RTVh6-dHYtV24rCcmzXBQ8Opw-OHj3c4QwyNYGDU2jOnBjkIzQQmQZYTv0_T_oxo0-juuO4jhnjOO_1Eo1IG1Xu9hY70zlvCA5i205idTsP1RcBlqrXQe1jfcHgvReoL0LwUO9_yTBchcpeRCpyL97Opk9_Zgh9gf8Eccu</recordid><startdate>20241101</startdate><enddate>20241101</enddate><creator>Gnutikov, Alexander A</creator><creator>Nosov, Nikolai N</creator><creator>Muravenko, Olga V</creator><creator>Amosova, Alexandra V</creator><creator>Shneyer, Victoria S</creator><creator>Loskutov, Igor G</creator><creator>Punina, Elizaveta O</creator><creator>Rodionov, Alexander V</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-5208-6702</orcidid><orcidid>https://orcid.org/0000-0002-5264-5594</orcidid><orcidid>https://orcid.org/0000-0003-3150-8598</orcidid></search><sort><creationdate>20241101</creationdate><title>Genetic Diversity of the Species of the Genus Deschampsia P.Beauv. 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(Poaceae) Based on the Analysis of the ITS Region: Polymorphism Proves Distant Hybridization</atitle><jtitle>International journal of molecular sciences</jtitle><addtitle>Int J Mol Sci</addtitle><date>2024-11-01</date><risdate>2024</risdate><volume>25</volume><issue>21</issue><spage>11348</spage><pages>11348-</pages><issn>1422-0067</issn><issn>1661-6596</issn><eissn>1422-0067</eissn><abstract>The species of the genus
are difficult for identification, and the genus is difficult for taxonomic treatment. The regions of 35S rRNA genes were studied for the species of the genus
of different geographical origin with a method of sequencing by Sanger (ITS1-5.8S rRNA gene-ITS2, 14 species) and with a method of a locus-specific next-generation sequencing (NGS) on the Illumina platform (ITS1-5.8S rRNA, 7 species). All species of
formed one clade; the species, referred by some authors on the basis of morphological characters to the species
s.l., entered one subclade. Subantarctic species formed a separate subclade and their ribotypes formed their own subnetwork.
, earlier referred to
, entered the other clade, though this species contains some ribotypes common with some
species.
and related mountain species have their own specific ribotype groups. On the network of the ribotypes, one can see that
from Great Britain forms a network with some species, but
from the USA forms its own network. Ribotype analysis of each sample revealed traces of introgression with
in
and with
and probable introgression of Northern and subantarctic species.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>39518900</pmid><doi>10.3390/ijms252111348</doi><orcidid>https://orcid.org/0000-0002-5208-6702</orcidid><orcidid>https://orcid.org/0000-0002-5264-5594</orcidid><orcidid>https://orcid.org/0000-0003-3150-8598</orcidid><oa>free_for_read</oa></addata></record> |
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| ispartof | International journal of molecular sciences, 2024-11, Vol.25 (21), p.11348 |
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| source | MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; MDPI - Multidisciplinary Digital Publishing Institute; PubMed Central |
| subjects | Biological diversity DNA, Plant - genetics DNA, Ribosomal Spacer - genetics Genetic Variation High-Throughput Nucleotide Sequencing - methods Hybridization Hybridization, Genetic Morphology Phylogenetics Phylogeny Poaceae - classification Poaceae - genetics Polymorphism Polymorphism, Genetic RNA |
| title | Genetic Diversity of the Species of the Genus Deschampsia P.Beauv. (Poaceae) Based on the Analysis of the ITS Region: Polymorphism Proves Distant Hybridization |
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