Analysis of neutrophil extracellular trap‐related genes in Crohn's disease based on bioinformatics

Crohn's disease (CD) presents with diverse clinical phenotypes due to persistent inflammation of the gastrointestinal tract. Its global incidence is on the rise. Neutrophil extracellular traps (NETs) are networks released by neutrophils that capture microbicidal proteins and oxidases targeting...

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Veröffentlicht in:Journal of cellular and molecular medicine 2024-08, Vol.28 (16), p.e70013-n/a
Hauptverfasser: Chen, Libin, Ai, Feiyan, Wu, Xing, Yu, Wentao, Jin, Xintong, Ma, Jian, Xiang, Bo, Shen, Shourong, Li, Xiayu
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Sprache:eng
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Zusammenfassung:Crohn's disease (CD) presents with diverse clinical phenotypes due to persistent inflammation of the gastrointestinal tract. Its global incidence is on the rise. Neutrophil extracellular traps (NETs) are networks released by neutrophils that capture microbicidal proteins and oxidases targeting pathogens. Research has shown that NETs are implicated in the pathogenesis of several immune‐mediated diseases such as rheumatoid arthritis, systemic lupus erythematosus and inflammatory bowel disease. The goal of this study was to identify a panel of NET‐related genes to construct a diagnostic and therapeutic model for CD. Through analysis of the GEO database, we identified 1950 differentially expressed genes (DEGs) associated with CD. Gene enrichment and immune cell infiltration analyses indicate that neutrophil infiltrates and chemokine‐related pathways are predominantly involved in CD, with other immune cells such as CD4 and M1 macrophages also playing a role in disease progression. Utilizing weighted gene co‐expression network analysis (WGCNA) and protein–protein interaction (PPI) networks, we identified six hub genes (SPP1, SOCS3, TIMP1, IRF1, CXCL2 and CD274). To validate the accuracy of our model, we performed external validation with statistical differences(p 
ISSN:1582-1838
1582-4934
1582-4934
DOI:10.1111/jcmm.70013