Characterization and Comparative Analysis of Complete Chloroplast Genomes of Four Bromus (Poaceae, Bromeae) Species

(Poaceae Bromeae) is a forage grass with high adaptability and ecological and economic value. Here, we sequenced , , , and chloroplast genomes and compared them with four previously described species. The genome sizes of species ranged from 136,934 bp ( ) to 137,189 bp ( , ), with a typical quadripa...

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Veröffentlicht in:Genes 2024-06, Vol.15 (6), p.815
Hauptverfasser: Li, Shichao, Tian, Chunyu, Hu, Haihong, Yang, Yanting, Ma, Huiling, Liu, Qian, Liu, Lemeng, Li, Zhiyong, Wu, Zinian
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Sprache:eng
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Zusammenfassung:(Poaceae Bromeae) is a forage grass with high adaptability and ecological and economic value. Here, we sequenced , , , and chloroplast genomes and compared them with four previously described species. The genome sizes of species ranged from 136,934 bp ( ) to 137,189 bp ( , ), with a typical quadripartite structure. The studied species had 129 genes, consisting of 83 protein-coding, 38 tRNA-coding, and 8 rRNA-coding genes. The highest GC content was found in the inverted repeat (IR) region (43.85-44.15%), followed by the large single-copy (LSC) region (36.25-36.65%) and the small single-copy (SSC) region (32.21-32.46%). There were 33 high-frequency codons, with those ending in A/U accounting for 90.91%. A total of 350 simple sequence repeats (SSRs) were identified, with single-nucleotide repeats being the most common (61.43%). A total of 228 forward and 141 palindromic repeats were identified. No reverse or complementary repeats were detected. The sequence identities of all sequences were very similar, especially with respect to the protein-coding and inverted repeat regions. Seven highly variable regions were detected, which could be used for molecular marker development. The constructed phylogenetic tree indicates that is a monophyletic taxon closely related to Triticum. This comparative analysis of the chloroplast genome of provides a scientific basis for species identification and phylogenetic studies.
ISSN:2073-4425
2073-4425
DOI:10.3390/genes15060815