Genome-wide mapping of DNase I hypersensitive sites in rare cell populations using single-cell DNase sequencing
DNase I hypersensitive sites (DHSs) are regions of accessible chromatin that are indicative of regions involved in the regulation of gene expression. scDNase-seq allows genome-wide detection of DHSs from a low number of cells, including single cells. Increased chromatin accessibility is a feature of...
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Veröffentlicht in: | Nature protocols 2017-11, Vol.12 (11), p.2342-2354 |
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Sprache: | eng |
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Zusammenfassung: | DNase I hypersensitive sites (DHSs) are regions of accessible chromatin that are indicative of regions involved in the regulation of gene expression. scDNase-seq allows genome-wide detection of DHSs from a low number of cells, including single cells.
Increased chromatin accessibility is a feature of cell-type-specific
cis
-regulatory elements; therefore, mapping of DNase I hypersensitive sites (DHSs) enables the detection of active regulatory elements of transcription, including promoters, enhancers, insulators and locus-control regions. Single-cell DNase sequencing (scDNase-seq) is a method of detecting genome-wide DHSs when starting with either single cells or |
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ISSN: | 1754-2189 1750-2799 |
DOI: | 10.1038/nprot.2017.099 |