Genome-wide mapping of DNase I hypersensitive sites in rare cell populations using single-cell DNase sequencing

DNase I hypersensitive sites (DHSs) are regions of accessible chromatin that are indicative of regions involved in the regulation of gene expression. scDNase-seq allows genome-wide detection of DHSs from a low number of cells, including single cells. Increased chromatin accessibility is a feature of...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Nature protocols 2017-11, Vol.12 (11), p.2342-2354
Hauptverfasser: Cooper, James, Ding, Yi, Song, Jiuzhou, Zhao, Keji
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
Beschreibung
Zusammenfassung:DNase I hypersensitive sites (DHSs) are regions of accessible chromatin that are indicative of regions involved in the regulation of gene expression. scDNase-seq allows genome-wide detection of DHSs from a low number of cells, including single cells. Increased chromatin accessibility is a feature of cell-type-specific cis -regulatory elements; therefore, mapping of DNase I hypersensitive sites (DHSs) enables the detection of active regulatory elements of transcription, including promoters, enhancers, insulators and locus-control regions. Single-cell DNase sequencing (scDNase-seq) is a method of detecting genome-wide DHSs when starting with either single cells or
ISSN:1754-2189
1750-2799
DOI:10.1038/nprot.2017.099