The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz (Staphyleaceae) isolated in Korea
The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz isolated in Korea is 160,606 bp long and has four subregions: 89,232 bp of large single-copy and 18,734 bp of small single-copy regions are separated by 26,320 bp of inverted repeat regions including 129 genes (84 CDS, 8 rRNAs, an...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2020-07, Vol.5 (3), p.3751-3753 |
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| description | The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz isolated in Korea is 160,606 bp long and has four subregions: 89,232 bp of large single-copy and 18,734 bp of small single-copy regions are separated by 26,320 bp of inverted repeat regions including 129 genes (84 CDS, 8 rRNAs, and 37 tRNAs) and three pseudogenes. There were 424 SNPs and 809 INDELs compared with the Chinese E. japonica, useful to develop markers for phylogeographic study of the species. Phylogenetic trees show that E. japonica, representing Crossosomatales, is nested within the Malvids clade, confirming previous studies. |
| doi_str_mv | 10.1080/23802359.2020.1835571 |
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Kanitz (Staphyleaceae) isolated in Korea</title><source>Taylor & Francis Open Access</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><creator>Oh, Sang-Hun ; Park, Jongsun</creator><creatorcontrib>Oh, Sang-Hun ; Park, Jongsun</creatorcontrib><description>The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz isolated in Korea is 160,606 bp long and has four subregions: 89,232 bp of large single-copy and 18,734 bp of small single-copy regions are separated by 26,320 bp of inverted repeat regions including 129 genes (84 CDS, 8 rRNAs, and 37 tRNAs) and three pseudogenes. There were 424 SNPs and 809 INDELs compared with the Chinese E. japonica, useful to develop markers for phylogeographic study of the species. Phylogenetic trees show that E. japonica, representing Crossosomatales, is nested within the Malvids clade, confirming previous studies.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2020.1835571</identifier><identifier>PMID: 33367094</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Chloroplasts ; Crossosomatales ; Euscaphis japonica ; Genomes ; intraspecific variations ; Inverted repeat ; Jeju Island ; Korea ; Mitogenome Announcement ; Phylogeny ; Pseudogenes ; Single-nucleotide polymorphism</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2020-07, Vol.5 (3), p.3751-3753</ispartof><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2020</rights><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2020 The Author(s). 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Phylogenetic trees show that E. japonica, representing Crossosomatales, is nested within the Malvids clade, confirming previous studies.</description><subject>Chloroplasts</subject><subject>Crossosomatales</subject><subject>Euscaphis japonica</subject><subject>Genomes</subject><subject>intraspecific variations</subject><subject>Inverted repeat</subject><subject>Jeju Island</subject><subject>Korea</subject><subject>Mitogenome Announcement</subject><subject>Phylogeny</subject><subject>Pseudogenes</subject><subject>Single-nucleotide polymorphism</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kktv1DAUhSMEolXpTwBFYtMuZvAjjpMNAlUFqlZiwbC2rl8zHjl2sBPQ8OvxMNOqZYG88NW53z1-6FTVa4yWGHXoHaEdIpT1S4JIkTrKGMfPqtO9vtg3nj-qT6rznLcIIdxSznv-sjqhlLYc9c1ptV5tTK3iMHozlWLjY4qjhzzVaxPiYOpo6-s5Kxg3LtdbGGNwCuqL1WYOcnlZ30Jw0-_64ttUiJ03oAyYy9rl6GEyunahvo3JwKvqhQWfzflxP6u-f7peXX1Z3H39fHP18W6hWEumRWcJRw0mYJFGssVYISDQcCk1Zi1IJXtJu0b3Pbe01b1lsiymFMV9wzXQs-rm4KsjbMWY3ABpJyI48VeIaS0gTU55I3BnrDIS81bjMtuD5BzhxsqGG42ULV7vD17jLAejlQlTAv_E9GknuI1Yx5-Ctxxz1BWDi6NBij9mkycxuKyM9xBMnLMgDacN5gy1BX37D7qNcwrlqwRhhDBMedcUih0olWLOydiHy2Ak9skQ98kQ-2SIYzLK3JvHL3mYus9BAT4cABdsTAP8islrMcGu5MEmCMplQf9_xh9ICsgt</recordid><startdate>20200702</startdate><enddate>20200702</enddate><creator>Oh, Sang-Hun</creator><creator>Park, Jongsun</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0003-0786-4701</orcidid><orcidid>https://orcid.org/0000-0001-8778-4458</orcidid></search><sort><creationdate>20200702</creationdate><title>The complete chloroplast genome of Euscaphis japonica (Thunb.) 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| subjects | Chloroplasts Crossosomatales Euscaphis japonica Genomes intraspecific variations Inverted repeat Jeju Island Korea Mitogenome Announcement Phylogeny Pseudogenes Single-nucleotide polymorphism |
| title | The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz (Staphyleaceae) isolated in Korea |
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