The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz (Staphyleaceae) isolated in Korea

The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz (Staphyleaceae) isolated in Korea

The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz isolated in Korea is 160,606 bp long and has four subregions: 89,232 bp of large single-copy and 18,734 bp of small single-copy regions are separated by 26,320 bp of inverted repeat regions including 129 genes (84 CDS, 8 rRNAs, an...

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Veröffentlicht in:Mitochondrial DNA. Part B. Resources 2020-07, Vol.5 (3), p.3751-3753
Hauptverfasser: Oh, Sang-Hun, Park, Jongsun
Format: Artikel
Sprache:eng
Schlagworte:
Chloroplasts
Crossosomatales
Euscaphis japonica
Genomes
intraspecific variations
Inverted repeat
Jeju Island
Korea
Mitogenome Announcement
Phylogeny
Pseudogenes
Single-nucleotide polymorphism
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Zusammenfassung:The complete chloroplast genome of Euscaphis japonica (Thunb.) Kanitz isolated in Korea is 160,606 bp long and has four subregions: 89,232 bp of large single-copy and 18,734 bp of small single-copy regions are separated by 26,320 bp of inverted repeat regions including 129 genes (84 CDS, 8 rRNAs, and 37 tRNAs) and three pseudogenes. There were 424 SNPs and 809 INDELs compared with the Chinese E. japonica, useful to develop markers for phylogeographic study of the species. Phylogenetic trees show that E. japonica, representing Crossosomatales, is nested within the Malvids clade, confirming previous studies.
ISSN:2380-2359
2380-2359
DOI:10.1080/23802359.2020.1835571