Expanding DP4: application to drug compounds and automation

The DP4 parameter, which provides a confidence level for NMR assignment, has been widely used to help assign the structures of many stereochemically-rich molecules. We present an improved version of the procedure, which can be downloaded as Python script instead of running within a web-browser, and...

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Veröffentlicht in:Organic & biomolecular chemistry 2016-04, Vol.14 (16), p.3943-3949
Hauptverfasser: Ermanis, Kristaps, Parkes, Kevin E. B, Agback, Tatiana, Goodman, Jonathan M
Format: Artikel
Sprache:eng
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Zusammenfassung:The DP4 parameter, which provides a confidence level for NMR assignment, has been widely used to help assign the structures of many stereochemically-rich molecules. We present an improved version of the procedure, which can be downloaded as Python script instead of running within a web-browser, and which analyses output from open-source molecular modelling programs (TINKER and NWChem) in addition to being able to use output from commercial packages (Schrodinger's Macromodel and Jaguar; Gaussian). The new open-source workflow incorporates a method for the automatic generation of diastereomers using InChI strings and has been tested on a range of new structures. This improved workflow permits the rapid and convenient computational elucidation of structure and relative stereochemistry. The DP4 parameter, which provides a confidence level for NMR assignment, has been widely used to help assign the structures of many stereochemically-rich molecules.
ISSN:1477-0520
1477-0539
DOI:10.1039/c6ob00015k