Scaling law characterizing the dynamics of the transition of HIV-1 to error catastrophe
Increasing the mutation rate, of viruses above a threshold, has been predicted to trigger a catastrophic loss of viral genetic information and is being explored as a novel intervention strategy. Here, we examine the dynamics of this transition using stochastic simulations mimicking within-host HIV-1...
Gespeichert in:
Veröffentlicht in: | Physical biology 2015-09, Vol.12 (5), p.054001-54006 |
---|---|
Hauptverfasser: | , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 54006 |
---|---|
container_issue | 5 |
container_start_page | 054001 |
container_title | Physical biology |
container_volume | 12 |
creator | Gupta, Vipul Dixit, Narendra M |
description | Increasing the mutation rate, of viruses above a threshold, has been predicted to trigger a catastrophic loss of viral genetic information and is being explored as a novel intervention strategy. Here, we examine the dynamics of this transition using stochastic simulations mimicking within-host HIV-1 evolution. We find a scaling law governing the characteristic time of the transition: The law is robust to variations in underlying evolutionary forces and presents guidelines for treatment of HIV-1 infection with mutagens. We estimate that many years of treatment would be required before HIV-1 can suffer an error catastrophe. |
doi_str_mv | 10.1088/1478-3975/12/5/054001 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmed_primary_26331636</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1827885680</sourcerecordid><originalsourceid>FETCH-LOGICAL-c497t-4fde7ff3bc8b51a898eca4c3ba741cc8b0cddab82b19370c0dbd9f2f9b90a2663</originalsourceid><addsrcrecordid>eNqFkMtOwzAQRS0EoqXwCaAs2YT4kcTOElVAK1ViwWtpTRyHpkriYLtC5etJSKnYsZqZq3tnNAehS4JvCBYiIjEXIct4EhEaJRFOYozJEZoe9OM__QSdObfBmGYU81M0oSljJGXpFL09Kair9j2o4TNQa7CgvLbV1yD5tQ6KXQtNpVxgyp_ZW2hd5SvTDspi-RqSwJtAW2tsoMCD89Z0a32OTkqonb7Y1xl6ub97ni_C1ePDcn67ClWccR_GZaF5WbJciTwhIDKhFcSK5cBjonoRq6KAXNCcZIxjhYu8yEpaZnmGgaYpm6HrcW9nzcdWOy-byild19Bqs3WSCMqFSFKBe2syWpU1zlldys5WDdidJFgOTOXASw68JKEykSPTPne1P7HNG10cUr8QewMZDZXp5MZsbdt__M_Sby2pga4</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1827885680</pqid></control><display><type>article</type><title>Scaling law characterizing the dynamics of the transition of HIV-1 to error catastrophe</title><source>MEDLINE</source><source>IOP Publishing Journals</source><source>Institute of Physics (IOP) Journals - HEAL-Link</source><creator>Gupta, Vipul ; Dixit, Narendra M</creator><creatorcontrib>Gupta, Vipul ; Dixit, Narendra M</creatorcontrib><description>Increasing the mutation rate, of viruses above a threshold, has been predicted to trigger a catastrophic loss of viral genetic information and is being explored as a novel intervention strategy. Here, we examine the dynamics of this transition using stochastic simulations mimicking within-host HIV-1 evolution. We find a scaling law governing the characteristic time of the transition: The law is robust to variations in underlying evolutionary forces and presents guidelines for treatment of HIV-1 infection with mutagens. We estimate that many years of treatment would be required before HIV-1 can suffer an error catastrophe.</description><identifier>ISSN: 1478-3975</identifier><identifier>ISSN: 1478-3967</identifier><identifier>EISSN: 1478-3975</identifier><identifier>DOI: 10.1088/1478-3975/12/5/054001</identifier><identifier>PMID: 26331636</identifier><identifier>CODEN: PBHIAT</identifier><language>eng</language><publisher>England: IOP Publishing</publisher><subject>Computer Simulation ; error catastrophe ; Evolution, Molecular ; HIV ; HIV Infections - genetics ; HIV Infections - therapy ; HIV Infections - virology ; HIV-1 - drug effects ; HIV-1 - genetics ; HIV-1 - physiology ; Humans ; Lentivirus ; Models, Genetic ; mutagen ; Mutagens - pharmacology ; Mutation Rate ; quasispecies ; scaling law ; Stochastic Processes ; Virus Replication - drug effects</subject><ispartof>Physical biology, 2015-09, Vol.12 (5), p.054001-54006</ispartof><rights>2015 IOP Publishing Ltd</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c497t-4fde7ff3bc8b51a898eca4c3ba741cc8b0cddab82b19370c0dbd9f2f9b90a2663</citedby><cites>FETCH-LOGICAL-c497t-4fde7ff3bc8b51a898eca4c3ba741cc8b0cddab82b19370c0dbd9f2f9b90a2663</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://iopscience.iop.org/article/10.1088/1478-3975/12/5/054001/pdf$$EPDF$$P50$$Giop$$Hfree_for_read</linktopdf><link.rule.ids>314,776,780,27901,27902,53821,53868</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26331636$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gupta, Vipul</creatorcontrib><creatorcontrib>Dixit, Narendra M</creatorcontrib><title>Scaling law characterizing the dynamics of the transition of HIV-1 to error catastrophe</title><title>Physical biology</title><addtitle>PB</addtitle><addtitle>Phys. Biol</addtitle><description>Increasing the mutation rate, of viruses above a threshold, has been predicted to trigger a catastrophic loss of viral genetic information and is being explored as a novel intervention strategy. Here, we examine the dynamics of this transition using stochastic simulations mimicking within-host HIV-1 evolution. We find a scaling law governing the characteristic time of the transition: The law is robust to variations in underlying evolutionary forces and presents guidelines for treatment of HIV-1 infection with mutagens. We estimate that many years of treatment would be required before HIV-1 can suffer an error catastrophe.</description><subject>Computer Simulation</subject><subject>error catastrophe</subject><subject>Evolution, Molecular</subject><subject>HIV</subject><subject>HIV Infections - genetics</subject><subject>HIV Infections - therapy</subject><subject>HIV Infections - virology</subject><subject>HIV-1 - drug effects</subject><subject>HIV-1 - genetics</subject><subject>HIV-1 - physiology</subject><subject>Humans</subject><subject>Lentivirus</subject><subject>Models, Genetic</subject><subject>mutagen</subject><subject>Mutagens - pharmacology</subject><subject>Mutation Rate</subject><subject>quasispecies</subject><subject>scaling law</subject><subject>Stochastic Processes</subject><subject>Virus Replication - drug effects</subject><issn>1478-3975</issn><issn>1478-3967</issn><issn>1478-3975</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>O3W</sourceid><sourceid>EIF</sourceid><recordid>eNqFkMtOwzAQRS0EoqXwCaAs2YT4kcTOElVAK1ViwWtpTRyHpkriYLtC5etJSKnYsZqZq3tnNAehS4JvCBYiIjEXIct4EhEaJRFOYozJEZoe9OM__QSdObfBmGYU81M0oSljJGXpFL09Kair9j2o4TNQa7CgvLbV1yD5tQ6KXQtNpVxgyp_ZW2hd5SvTDspi-RqSwJtAW2tsoMCD89Z0a32OTkqonb7Y1xl6ub97ni_C1ePDcn67ClWccR_GZaF5WbJciTwhIDKhFcSK5cBjonoRq6KAXNCcZIxjhYu8yEpaZnmGgaYpm6HrcW9nzcdWOy-byild19Bqs3WSCMqFSFKBe2syWpU1zlldys5WDdidJFgOTOXASw68JKEykSPTPne1P7HNG10cUr8QewMZDZXp5MZsbdt__M_Sby2pga4</recordid><startdate>20150902</startdate><enddate>20150902</enddate><creator>Gupta, Vipul</creator><creator>Dixit, Narendra M</creator><general>IOP Publishing</general><scope>O3W</scope><scope>TSCCA</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7U9</scope><scope>H94</scope></search><sort><creationdate>20150902</creationdate><title>Scaling law characterizing the dynamics of the transition of HIV-1 to error catastrophe</title><author>Gupta, Vipul ; Dixit, Narendra M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c497t-4fde7ff3bc8b51a898eca4c3ba741cc8b0cddab82b19370c0dbd9f2f9b90a2663</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Computer Simulation</topic><topic>error catastrophe</topic><topic>Evolution, Molecular</topic><topic>HIV</topic><topic>HIV Infections - genetics</topic><topic>HIV Infections - therapy</topic><topic>HIV Infections - virology</topic><topic>HIV-1 - drug effects</topic><topic>HIV-1 - genetics</topic><topic>HIV-1 - physiology</topic><topic>Humans</topic><topic>Lentivirus</topic><topic>Models, Genetic</topic><topic>mutagen</topic><topic>Mutagens - pharmacology</topic><topic>Mutation Rate</topic><topic>quasispecies</topic><topic>scaling law</topic><topic>Stochastic Processes</topic><topic>Virus Replication - drug effects</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gupta, Vipul</creatorcontrib><creatorcontrib>Dixit, Narendra M</creatorcontrib><collection>IOP Publishing Free Content</collection><collection>IOPscience (Open Access)</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Virology and AIDS Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><jtitle>Physical biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gupta, Vipul</au><au>Dixit, Narendra M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Scaling law characterizing the dynamics of the transition of HIV-1 to error catastrophe</atitle><jtitle>Physical biology</jtitle><stitle>PB</stitle><addtitle>Phys. Biol</addtitle><date>2015-09-02</date><risdate>2015</risdate><volume>12</volume><issue>5</issue><spage>054001</spage><epage>54006</epage><pages>054001-54006</pages><issn>1478-3975</issn><issn>1478-3967</issn><eissn>1478-3975</eissn><coden>PBHIAT</coden><abstract>Increasing the mutation rate, of viruses above a threshold, has been predicted to trigger a catastrophic loss of viral genetic information and is being explored as a novel intervention strategy. Here, we examine the dynamics of this transition using stochastic simulations mimicking within-host HIV-1 evolution. We find a scaling law governing the characteristic time of the transition: The law is robust to variations in underlying evolutionary forces and presents guidelines for treatment of HIV-1 infection with mutagens. We estimate that many years of treatment would be required before HIV-1 can suffer an error catastrophe.</abstract><cop>England</cop><pub>IOP Publishing</pub><pmid>26331636</pmid><doi>10.1088/1478-3975/12/5/054001</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1478-3975 |
ispartof | Physical biology, 2015-09, Vol.12 (5), p.054001-54006 |
issn | 1478-3975 1478-3967 1478-3975 |
language | eng |
recordid | cdi_pubmed_primary_26331636 |
source | MEDLINE; IOP Publishing Journals; Institute of Physics (IOP) Journals - HEAL-Link |
subjects | Computer Simulation error catastrophe Evolution, Molecular HIV HIV Infections - genetics HIV Infections - therapy HIV Infections - virology HIV-1 - drug effects HIV-1 - genetics HIV-1 - physiology Humans Lentivirus Models, Genetic mutagen Mutagens - pharmacology Mutation Rate quasispecies scaling law Stochastic Processes Virus Replication - drug effects |
title | Scaling law characterizing the dynamics of the transition of HIV-1 to error catastrophe |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-01T04%3A45%3A49IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Scaling%20law%20characterizing%20the%20dynamics%20of%20the%20transition%20of%20HIV-1%20to%20error%20catastrophe&rft.jtitle=Physical%20biology&rft.au=Gupta,%20Vipul&rft.date=2015-09-02&rft.volume=12&rft.issue=5&rft.spage=054001&rft.epage=54006&rft.pages=054001-54006&rft.issn=1478-3975&rft.eissn=1478-3975&rft.coden=PBHIAT&rft_id=info:doi/10.1088/1478-3975/12/5/054001&rft_dat=%3Cproquest_pubme%3E1827885680%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1827885680&rft_id=info:pmid/26331636&rfr_iscdi=true |