Fast method of homology and purine-pyrimidine mutual relations between DNA sequences search

A new algorithm for scanning sequences is described. This algorithm uses the boolean operators AND and OR. The mutual information between the sequences is used as a measure of sequence interrelation. It allows evaluation of the probability of accidental sequence interrelation in a quantitative manne...

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Veröffentlicht in:	DNA sequence 1994, Vol.4 (6), p.413-415
1. Verfasser:	Korotkov, E.V
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Animals computer analysis computer techniques Databases, Factual DNA sequences homology Humans mutual information nucleotide sequences Purine Nucleotides purine-pyrimidine interrelation purines Pyrimidine Nucleotides pyrimidines Repetitive Sequences, Nucleic Acid Sequence Alignment - methods Sequence Analysis, DNA sequence homology
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Beschreibung
Zusammenfassung:	A new algorithm for scanning sequences is described. This algorithm uses the boolean operators AND and OR. The mutual information between the sequences is used as a measure of sequence interrelation. It allows evaluation of the probability of accidental sequence interrelation in a quantitative manner. The proposed algorithm was used for searching for MB1 repeats in human and other mammalian sequences.
ISSN:	1042-5179 1029-2365
DOI:	10.3109/10425179409010192