TRAMP: a software package for generating transposon maps
TRAMP is a software package for generating transposon maps that are used for DNA sequencing. The package provides a variety of automated tools that can always be overridden by the user. The central part of the package is its selection algorithm that finds the most robust map with the smallest number...
Gespeichert in:
Veröffentlicht in: | Bioinformatics 1995-04, Vol.11 (2), p.173-179 |
---|---|
Hauptverfasser: | , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 179 |
---|---|
container_issue | 2 |
container_start_page | 173 |
container_title | Bioinformatics |
container_volume | 11 |
creator | Veklerov, Eugene Martin, Christopher H. Theil, Edward H. |
description | TRAMP is a software package for generating transposon maps that are used for DNA sequencing. The package provides a variety of automated tools that can always be overridden by the user. The central part of the package is its selection algorithm that finds the most robust map with the smallest number of inserts. TRAMP has been in daily use by the sequencing team at LBL since it was introduced in the Spring of 1994. It is applicable to any sequencing project utilizing the directed strategy. |
doi_str_mv | 10.1093/bioinformatics/11.2.173 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_77409157</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>16848529</sourcerecordid><originalsourceid>FETCH-LOGICAL-c352t-2368d7e991ef0da114b94e15c5ae8160ab0a47807dc3e8ef16956ec1cdfbf23e3</originalsourceid><addsrcrecordid>eNqFkE1rFEEQhhsxxJj4E8Q5iLfZdPXntLckRhOMGJYIkktT01O9jNn5SPcs0X_vhF0WPHmqgvd5q-Bh7B3wBXAnT-t2aPs4pA6nNuRTgIVYgJUv2BEow0vBtXs579LYUlVcvmKvc_7FuQal1CE7tEZw5_gRq-6WZ99uPxZY5CFOT5ioGDE84IqK-Xqxop7S_KJfFVPCPo9DHvqiwzGfsIOI60xvdvOY_fh8eXdxVd58_3J9cXZTBqnFVAppqsaSc0CRNwigaqcIdNBIFRiONUdlK26bIKmiCMZpQwFCE-soJMlj9mF7d0zD44by5Ls2B1qvsadhk721ijvQ9r8gmEpVWrgZtFswpCHnRNGPqe0w_fHA_bNc_69cD-CFn-XOzbe7F5u6o2bf29mc8_e7HHPAdZyNhTbvMalBC_GMlVuszRP93seYHryx0mp_9fPen39dLs8_3S89l38B8WKVrQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>16848529</pqid></control><display><type>article</type><title>TRAMP: a software package for generating transposon maps</title><source>Oxford University Press Journals Digital Archive legacy</source><source>MEDLINE</source><source>Access via Oxford University Press (Open Access Collection)</source><source>Alma/SFX Local Collection</source><creator>Veklerov, Eugene ; Martin, Christopher H. ; Theil, Edward H.</creator><creatorcontrib>Veklerov, Eugene ; Martin, Christopher H. ; Theil, Edward H.</creatorcontrib><description>TRAMP is a software package for generating transposon maps that are used for DNA sequencing. The package provides a variety of automated tools that can always be overridden by the user. The central part of the package is its selection algorithm that finds the most robust map with the smallest number of inserts. TRAMP has been in daily use by the sequencing team at LBL since it was introduced in the Spring of 1994. It is applicable to any sequencing project utilizing the directed strategy.</description><identifier>ISSN: 1367-4803</identifier><identifier>ISSN: 0266-7061</identifier><identifier>EISSN: 1460-2059</identifier><identifier>DOI: 10.1093/bioinformatics/11.2.173</identifier><identifier>PMID: 7620990</identifier><identifier>CODEN: COABER</identifier><language>eng</language><publisher>Washington, DC: Oxford University Press</publisher><subject>Algorithms ; Biological and medical sciences ; Chromosome Mapping ; DNA Transposable Elements ; Fundamental and applied biological sciences. Psychology ; General aspects ; Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) ; Sequence Analysis, DNA ; Software</subject><ispartof>Bioinformatics, 1995-04, Vol.11 (2), p.173-179</ispartof><rights>1995 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=3515220$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/7620990$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Veklerov, Eugene</creatorcontrib><creatorcontrib>Martin, Christopher H.</creatorcontrib><creatorcontrib>Theil, Edward H.</creatorcontrib><title>TRAMP: a software package for generating transposon maps</title><title>Bioinformatics</title><addtitle>Comput Appl Biosci</addtitle><description>TRAMP is a software package for generating transposon maps that are used for DNA sequencing. The package provides a variety of automated tools that can always be overridden by the user. The central part of the package is its selection algorithm that finds the most robust map with the smallest number of inserts. TRAMP has been in daily use by the sequencing team at LBL since it was introduced in the Spring of 1994. It is applicable to any sequencing project utilizing the directed strategy.</description><subject>Algorithms</subject><subject>Biological and medical sciences</subject><subject>Chromosome Mapping</subject><subject>DNA Transposable Elements</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>General aspects</subject><subject>Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)</subject><subject>Sequence Analysis, DNA</subject><subject>Software</subject><issn>1367-4803</issn><issn>0266-7061</issn><issn>1460-2059</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1995</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkE1rFEEQhhsxxJj4E8Q5iLfZdPXntLckRhOMGJYIkktT01O9jNn5SPcs0X_vhF0WPHmqgvd5q-Bh7B3wBXAnT-t2aPs4pA6nNuRTgIVYgJUv2BEow0vBtXs579LYUlVcvmKvc_7FuQal1CE7tEZw5_gRq-6WZ99uPxZY5CFOT5ioGDE84IqK-Xqxop7S_KJfFVPCPo9DHvqiwzGfsIOI60xvdvOY_fh8eXdxVd58_3J9cXZTBqnFVAppqsaSc0CRNwigaqcIdNBIFRiONUdlK26bIKmiCMZpQwFCE-soJMlj9mF7d0zD44by5Ls2B1qvsadhk721ijvQ9r8gmEpVWrgZtFswpCHnRNGPqe0w_fHA_bNc_69cD-CFn-XOzbe7F5u6o2bf29mc8_e7HHPAdZyNhTbvMalBC_GMlVuszRP93seYHryx0mp_9fPen39dLs8_3S89l38B8WKVrQ</recordid><startdate>19950401</startdate><enddate>19950401</enddate><creator>Veklerov, Eugene</creator><creator>Martin, Christopher H.</creator><creator>Theil, Edward H.</creator><general>Oxford University Press</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>19950401</creationdate><title>TRAMP: a software package for generating transposon maps</title><author>Veklerov, Eugene ; Martin, Christopher H. ; Theil, Edward H.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c352t-2368d7e991ef0da114b94e15c5ae8160ab0a47807dc3e8ef16956ec1cdfbf23e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1995</creationdate><topic>Algorithms</topic><topic>Biological and medical sciences</topic><topic>Chromosome Mapping</topic><topic>DNA Transposable Elements</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>General aspects</topic><topic>Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)</topic><topic>Sequence Analysis, DNA</topic><topic>Software</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Veklerov, Eugene</creatorcontrib><creatorcontrib>Martin, Christopher H.</creatorcontrib><creatorcontrib>Theil, Edward H.</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Bioinformatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Veklerov, Eugene</au><au>Martin, Christopher H.</au><au>Theil, Edward H.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>TRAMP: a software package for generating transposon maps</atitle><jtitle>Bioinformatics</jtitle><addtitle>Comput Appl Biosci</addtitle><date>1995-04-01</date><risdate>1995</risdate><volume>11</volume><issue>2</issue><spage>173</spage><epage>179</epage><pages>173-179</pages><issn>1367-4803</issn><issn>0266-7061</issn><eissn>1460-2059</eissn><coden>COABER</coden><abstract>TRAMP is a software package for generating transposon maps that are used for DNA sequencing. The package provides a variety of automated tools that can always be overridden by the user. The central part of the package is its selection algorithm that finds the most robust map with the smallest number of inserts. TRAMP has been in daily use by the sequencing team at LBL since it was introduced in the Spring of 1994. It is applicable to any sequencing project utilizing the directed strategy.</abstract><cop>Washington, DC</cop><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>7620990</pmid><doi>10.1093/bioinformatics/11.2.173</doi><tpages>7</tpages></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1367-4803 |
ispartof | Bioinformatics, 1995-04, Vol.11 (2), p.173-179 |
issn | 1367-4803 0266-7061 1460-2059 |
language | eng |
recordid | cdi_proquest_miscellaneous_77409157 |
source | Oxford University Press Journals Digital Archive legacy; MEDLINE; Access via Oxford University Press (Open Access Collection); Alma/SFX Local Collection |
subjects | Algorithms Biological and medical sciences Chromosome Mapping DNA Transposable Elements Fundamental and applied biological sciences. Psychology General aspects Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Sequence Analysis, DNA Software |
title | TRAMP: a software package for generating transposon maps |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-29T16%3A27%3A57IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=TRAMP:%20a%20software%20package%20for%20generating%20transposon%20maps&rft.jtitle=Bioinformatics&rft.au=Veklerov,%20Eugene&rft.date=1995-04-01&rft.volume=11&rft.issue=2&rft.spage=173&rft.epage=179&rft.pages=173-179&rft.issn=1367-4803&rft.eissn=1460-2059&rft.coden=COABER&rft_id=info:doi/10.1093/bioinformatics/11.2.173&rft_dat=%3Cproquest_cross%3E16848529%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=16848529&rft_id=info:pmid/7620990&rfr_iscdi=true |