An open-source toolkit for the volumetric measurement of CT lung lesions

An open source lesion sizing toolkit has been developed with a general architecture for implementing lesion segmentation algorithms and a reference algorithm for segmenting solid and part-solid lesions from lung CT scans. The CT lung lesion segmentation algorithm detects four three-dimensional features corresponding to the lung wall, vasculature, lesion boundary edges, and low density background lung parenchyma. These features form boundaries and propagation zones that guide the evolution of a subsequent level set algorithm. User input is used to determine an initial seed point for the level set and users may also define a region of interest around the lesion. The methods are validated against 18 nodules using CT scans of an anthropomorphic thorax phantom simulating lung anatomy. The scans were acquired under differing scanner parameters to characterize algorithm behavior under varying acquisition protocols. We also validated repeatability using six clinical cases in which the patient was rescanned on the same day (zero volume change). The source code, data sets, and a running application are all provided under an unrestrictive license to encourage reproducibility and foster scientific exchange.