MGFp: An Open Mascot Generic Format Parser Library Implementation

Despite the efforts of the mass spectrometry (MS) community to migrate data representation toward modern file formats, legacy text formats still play an important role in MS data processing workflows. We provide a formal grammar and a portable, efficient C++ implementation for a Mascot Generic Forma...

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Veröffentlicht in:	Journal of proteome research 2010-05, Vol.9 (5), p.2762-2763
Hauptverfasser:	Kirchner, Marc, Steen, Judith A. J, Hamprecht, Fred A, Steen, Hanno
Format:	Artikel
Sprache:	eng
Schlagworte:	Computational Biology - methods Database Management Systems Databases, Factual Mass Spectrometry - methods Programming Languages Terminology as Topic
Online-Zugang:	Volltext
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Beschreibung
Zusammenfassung:	Despite the efforts of the mass spectrometry (MS) community to migrate data representation toward modern file formats, legacy text formats still play an important role in MS data processing workflows. We provide a formal grammar and a portable, efficient C++ implementation for a Mascot Generic Format (MGF) parser. Software and technical documentation are available from http://software.steenlab.org/mgfp/.
ISSN:	1535-3893 1535-3907
DOI:	10.1021/pr100118f