MAVG: locating non-overlapping maximum average segments in a given sequence
MAVG is a software tool for finding k non-overlapping maximum-average segments that are sufficiently long in a given sequence of real numbers, for any k > 0. It has applications in several areas of biomolecular sequence analysis including locating GC-rich regions and CpG islands in a genomic sequ...
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| Veröffentlicht in: | Bioinformatics (Oxford, England) England), 2003, Vol.19 (1), p.151-152 |
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| container_title | Bioinformatics (Oxford, England) |
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| creator | LIN, Yaw-Ling XIAOQIU HUANG TAO JIANG CHAO, Kun-Mao |
| description | MAVG is a software tool for finding k non-overlapping maximum-average segments that are sufficiently long in a given sequence of real numbers, for any k > 0. It has applications in several areas of biomolecular sequence analysis including locating GC-rich regions and CpG islands in a genomic sequence, and annotating multiple sequence alignments.
http://iubio.bio.indiana.edu/soft/molbio/pattern/cpg_islands/. |
| doi_str_mv | 10.1093/bioinformatics/19.1.151 |
| format | Article |
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Data processing in biology (general aspects)</subject><subject>Microbiology</subject><subject>Pathogenicity, virulence, toxins, bacteriocins, pyrogens, host-bacteria relations, miscellaneous strains</subject><subject>Sequence Alignment - methods</subject><subject>Sequence Analysis, DNA - methods</subject><subject>Software</subject><issn>1367-4803</issn><issn>1367-4811</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkV9vFCEUxYnR2HbtV2gnJvZtttwBBvCtaeyfWOOL9pUw7GVDMwMr7DT128ummzb64gtwb37nXOAQcgp0CVSz8yGkEH3Kk90GV85BL2EJAt6QQ2C9bLkCePtypuyAHJXyQCkVVPTvyQF0XGtG-0Py9dvF_fXnZkyuOsV1E1Ns0yPm0W42u3qyT2Gap8bWnl1jU3A9YdyWJsTGNuvwiLH2fs0YHX4g77wdCx7v9wX5efXlx-VNe_f9-vby4q51TKpt67lfDXwFgxZ8JZxzA6VSoRe0k0JpzqT3wjHeMQSNte5YXVhvO3S91sgW5OzZd5NTnVy2ZgrF4TjaiGkuRnZKM1m_6X8gqF6BUjvw4z_gQ5pzrI8woFUvBK03WBD5DLmcSsnozSaHyebfBqjZpWL-TqVKDZiaSlWe7O3nYcLVq24fQwU-7QFbnB19ttGF8spxITl0wP4Ag6WZFA</recordid><startdate>2003</startdate><enddate>2003</enddate><creator>LIN, Yaw-Ling</creator><creator>XIAOQIU HUANG</creator><creator>TAO JIANG</creator><creator>CHAO, Kun-Mao</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7TM</scope><scope>7TO</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>H8G</scope><scope>H94</scope><scope>JG9</scope><scope>JQ2</scope><scope>K9.</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>2003</creationdate><title>MAVG: locating non-overlapping maximum average segments in a given sequence</title><author>LIN, Yaw-Ling ; XIAOQIU HUANG ; TAO JIANG ; CHAO, Kun-Mao</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c378t-f4fdb4d1b954d5cccb0078ef5027589437ff5c3423e19e9432394336a2ec699e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Algorithms</topic><topic>Bacteriology</topic><topic>Biological and medical sciences</topic><topic>CpG Islands - genetics</topic><topic>Fundamental and applied biological sciences. 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It has applications in several areas of biomolecular sequence analysis including locating GC-rich regions and CpG islands in a genomic sequence, and annotating multiple sequence alignments.
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| ispartof | Bioinformatics (Oxford, England), 2003, Vol.19 (1), p.151-152 |
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| source | OUP_牛津大学出版社OA刊; MEDLINE; Alma/SFX Local Collection; EZB Electronic Journals Library |
| subjects | Algorithms Bacteriology Biological and medical sciences CpG Islands - genetics Fundamental and applied biological sciences. Psychology General aspects Genes, Overlapping - genetics Genome, Human Humans Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Microbiology Pathogenicity, virulence, toxins, bacteriocins, pyrogens, host-bacteria relations, miscellaneous strains Sequence Alignment - methods Sequence Analysis, DNA - methods Software |
| title | MAVG: locating non-overlapping maximum average segments in a given sequence |
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