MAVG: locating non-overlapping maximum average segments in a given sequence

MAVG is a software tool for finding k non-overlapping maximum-average segments that are sufficiently long in a given sequence of real numbers, for any k > 0. It has applications in several areas of biomolecular sequence analysis including locating GC-rich regions and CpG islands in a genomic sequ...

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Veröffentlicht in:	Bioinformatics (Oxford, England) England), 2003, Vol.19 (1), p.151-152
Hauptverfasser:	LIN, Yaw-Ling, XIAOQIU HUANG, TAO JIANG, CHAO, Kun-Mao
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Bacteriology Biological and medical sciences CpG Islands - genetics Fundamental and applied biological sciences. Psychology General aspects Genes, Overlapping - genetics Genome, Human Humans Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Microbiology Pathogenicity, virulence, toxins, bacteriocins, pyrogens, host-bacteria relations, miscellaneous strains Sequence Alignment - methods Sequence Analysis, DNA - methods Software
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Beschreibung
Zusammenfassung:	MAVG is a software tool for finding k non-overlapping maximum-average segments that are sufficiently long in a given sequence of real numbers, for any k > 0. It has applications in several areas of biomolecular sequence analysis including locating GC-rich regions and CpG islands in a genomic sequence, and annotating multiple sequence alignments. http://iubio.bio.indiana.edu/soft/molbio/pattern/cpg_islands/.
ISSN:	1367-4803 1367-4811
DOI:	10.1093/bioinformatics/19.1.151