DNACompress: fast and effective DNA sequence compression

While achieving the best compression ratios for DNA sequences, our new DNACompress program significantly improves the running time of all previous DNA compression programs. Availability: http://dna.cs.ucsb.edu/DNACompress Contact: chxin@cs.ucsb.edumli@cs.ucsb.edu * To whom correspondence should be a...

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Veröffentlicht in:Bioinformatics 2002-12, Vol.18 (12), p.1696-1698
Hauptverfasser: Chen, Xin, Li, Ming, Ma, Bin, Tromp, John
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container_title Bioinformatics
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creator Chen, Xin
Li, Ming
Ma, Bin
Tromp, John
description While achieving the best compression ratios for DNA sequences, our new DNACompress program significantly improves the running time of all previous DNA compression programs. Availability: http://dna.cs.ucsb.edu/DNACompress Contact: chxin@cs.ucsb.edumli@cs.ucsb.edu * To whom correspondence should be addressed.
doi_str_mv 10.1093/bioinformatics/18.12.1696
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source MEDLINE; Access via Oxford University Press (Open Access Collection); EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection
subjects Algorithms
Biological and medical sciences
Computing Methodologies
Database Management Systems
Databases, Nucleic Acid
Fundamental and applied biological sciences. Psychology
General aspects
Humans
Information Storage and Retrieval - methods
Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)
Quality Control
Repetitive Sequences, Nucleic Acid - genetics
Sequence Analysis, DNA - methods
Software
title DNACompress: fast and effective DNA sequence compression
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